ggKbase home page

L3_072_000M1_scaffold_572

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_572_1
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32..955)
DNA (924bp) protein (308aa)
Beta-lactamase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7Z2_9FIRM
Beta-lactamase {ECO:0000313|EMBL:CDD02899.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
beta-lactamase
L3_072_000M1_scaffold_572_2
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

980..1186
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NPX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01902.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_072_000M1_scaffold_572_3
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1404..1868)
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Blautia RepID=R5C720_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF25542.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
crtK; tryptophan-rich sensory protein, TSPO-like protein
L3_072_000M1_scaffold_572_4
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2000..4570
DNA (2571bp) protein (857aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7Z5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02904.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_572_5
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4567..5688
DNA (1122bp) protein (374aa)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Alpha-galactosidase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0L0_9FIRM
alpha-galactosidase
L3_072_000M1_scaffold_572_6
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5777..6802)
DNA (1026bp) protein (342aa)
Fibronectin type III domain protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WFF1_9FIRM
Fibronectin type III domain protein {ECO:0000313|EMBL:CDD02906.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_572_7
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6953..7720)
DNA (768bp) protein (256aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Amino acid ABC transporter ATP-binding protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WFF7_9FIRM
Amino acid ABC transporter ATP-binding protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CDD02911.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_572_8
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7724..8380)
DNA (657bp) protein (219aa)
Predicted ABC-type polar amino acid transport system permease protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X967_9FIRM
Predicted ABC-type polar amino acid transport system permease protein {ECO:0000313|EMBL:CDD02912.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L3_072_000M1_scaffold_572_9
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8405..9244)
DNA (840bp) protein (280aa)
Extracellular solute-binding protein family 3 n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VW20_9FIRM
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:CDD02913.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
L3_072_000M1_scaffold_572_10
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9398..10183)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0M2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02915.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_572_11
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10186..11127)
DNA (942bp) protein (314aa)
Aldose 1-epimerase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WFG2_9FIRM
Aldose 1-epimerase {ECO:0000313|EMBL:CDD02916.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Aldose 1-epimerase
L3_072_000M1_scaffold_572_12
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11131..12783)
DNA (1653bp) protein (551aa)
endo-1,4-beta-xylanase A precursor (EC:3.2.1.8)
S-layer homology domain protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X974_9FIRM
S-layer homology domain protein {ECO:0000313|EMBL:CDD02917.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_572_13
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12964..13449
DNA (486bp) protein (162aa)
Monovalent cation/proton antiporter MnhE/PhaE family n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W806_9FIRM
Monovalent cation/proton antiporter MnhE/PhaE family {ECO:0000313|EMBL:CDD02919.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Multisubunit Na+/H+ antiporter, MnhE subunit
L3_072_000M1_scaffold_572_14
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13430..13723
DNA (294bp) protein (98aa)
Na+/H+ antiporter MnhF component n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0M8_9FIRM
Na+/H+ antiporter MnhF component {ECO:0000313|EMBL:CDD02920.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
mnhF; multiple resistance and pH regulation protein F
L3_072_000M1_scaffold_572_15
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13720..14049
DNA (330bp) protein (110aa)
Multisubunit Na+/H+ antiporter MnhG subunit n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WFG9_9FIRM
Multisubunit Na+/H+ antiporter MnhG subunit {ECO:0000313|EMBL:CDD02921.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Multisubunit Na+/H+ antiporter, MnhG subunit
L3_072_000M1_scaffold_572_16
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14053..14331
DNA (279bp) protein (93aa)
pH adaptation potassium efflux system protein B 1 sodium/hydrogen antiporter subunit n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X980_9FIRM
pH adaptation potassium efflux system protein B 1 sodium/hydrogen antiporter subunit {ECO:0000313|EMBL:CDD02922.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_572_17
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14312..15253
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VW33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02923.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Multisubunit Na+/H+ antiporter, MnhB subunit
L3_072_000M1_scaffold_572_18
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15253..15630
DNA (378bp) protein (126aa)
Multisubunit Na+/H+ antiporter MnhC subunit n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0N5_9FIRM
Multisubunit Na+/H+ antiporter MnhC subunit {ECO:0000313|EMBL:CDD02925.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Multisubunit Na+/H+ antiporter, MnhC subunit
L3_072_000M1_scaffold_572_19
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15632..17128
DNA (1497bp) protein (499aa)
Putative NADH dehydrogenase/oxidoreductase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WFH4_9FIRM
Putative NADH dehydrogenase/oxidoreductase {ECO:0000313|EMBL:CDD02926.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
L3_072_000M1_scaffold_572_20
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17142..18566
DNA (1425bp) protein (475aa)
Sodium/proton antiporter ShaA n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X988_9FIRM
Sodium/proton antiporter ShaA {ECO:0000313|EMBL:CDD02927.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
L3_072_000M1_scaffold_572_21
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18582..20039
DNA (1458bp) protein (486aa)
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit (EC:1.6.99.5)
NADH-ubiquinone/plastoquinone oxidoreductase family protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VW39_9FIRM
NADH-ubiquinone/plastoquinone oxidoreductase family protein {ECO:0000313|EMBL:CDD02928.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_572_22
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20055..22127
DNA (2073bp) protein (691aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5ICT4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60705.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
L3_072_000M1_scaffold_572_23
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22232..23317
DNA (1086bp) protein (362aa)
Oxidoreductase domain protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WFI1_9FIRM
Oxidoreductase domain protein {ECO:0000313|EMBL:CDD02931.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
oxidoreductase domain-containing protein
L3_072_000M1_scaffold_572_24
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23358..24308
DNA (951bp) protein (317aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X993_9FIRM
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:CDD02932.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
xylose isomerase domain-containing protein
L3_072_000M1_scaffold_572_25
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24778..25749
DNA (972bp) protein (324aa)
ABC transporter substrate binding protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VW46_9FIRM
ABC transporter substrate binding protein {ECO:0000313|EMBL:CDD02933.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
ABC transporter substrate-binding protein
L3_072_000M1_scaffold_572_26
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25769..26692
DNA (924bp) protein (308aa)
ABC-type transporter integral membrane subunit n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W816_9FIRM
ABC-type transporter integral membrane subunit {ECO:0000313|EMBL:CDD02934.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
inner-membrane translocator
L3_072_000M1_scaffold_572_27
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26700..27494
DNA (795bp) protein (265aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0P9_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD02935.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_572_28
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27540..29093)
DNA (1554bp) protein (518aa)
LPXTG-motif protein cell wall anchor domain protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AL55_9CLOT
LPXTG-motif protein cell wall anchor domain protein {ECO:0000313|EMBL:CCX42589.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
hypothetical protein
L3_072_000M1_scaffold_572_29
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29083..29877)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X7A4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02302.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_572_30
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29874..30161)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VUB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02303.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Displaying items 1-30 of 43 in total

View Taxonomy