ggKbase home page

L3_072_000M1_scaffold_609

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_609_1
unknown

Not on your lists

comp(2..61)
DNA (60bp) protein (20aa)

This feature has no annotations

L3_072_000M1_scaffold_609_2
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

comp(58..2280)
DNA (2223bp) protein (741aa)
Type II restriction-modification system restriction subunit (EC:3.1.21.3)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I2Y1_9FIRM
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:CDB43650.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
L3_072_000M1_scaffold_609_3
Gardnerella vaginalis, Gardnerella, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2277..3344)
DNA (1068bp) protein (356aa)
dcm_2; DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=553190 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella.;" source="Gardnerella vaginalis (strain 409-05).;"
Cytosine-specific methyltransferase n=1 Tax=Gardnerella vaginalis (strain 409-05) RepID=D2RAE0_GARV4
L3_072_000M1_scaffold_609_4
Gardnerella vaginalis, Gardnerella, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3341..4069)
DNA (729bp) protein (243aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=682148 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella.;" source="Gardnerella vaginalis 5-1.;"
DNA methylase n=1 Tax=Bacillus cereus H3081.97 RepID=B5V3Q0_BACCE
DNA (cytosine-5-)-methyltransferase
L3_072_000M1_scaffold_609_5
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4095..4400)
DNA (306bp) protein (102aa)
transcriptional regulator n=1 Tax=Clostridium sporosphaeroides RepID=UPI000375AE64
excisionase
DNA binding domain protein, excisionase family {ECO:0000313|EMBL:AEE97977.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_072_000M1_scaffold_609_6
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4749..5273
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LR46_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR38698.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Bacterio-opsin activator HTH domain-containing protein
L3_072_000M1_scaffold_609_7
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5551..5862
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MPT0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL35766.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_072_000M1_scaffold_609_8
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5852..6979
DNA (1128bp) protein (376aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MPT1_9FIRM
Protein of unknown function (DUF2800).
Uncharacterized protein {ECO:0000313|EMBL:CBL35767.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_072_000M1_scaffold_609_9
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6981..7556
DNA (576bp) protein (192aa)
Uncharacterized protein n=4 Tax=Enterococcus faecium RepID=J6RXU6_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:EJX87715.1}; TaxID=1134824 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium ERV26.;"
hypothetical protein
L3_072_000M1_scaffold_609_10
unknown

Not on your lists

7570..7740
DNA (171bp) protein (57aa)

This feature has no annotations

L3_072_000M1_scaffold_609_11
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7804..9744
DNA (1941bp) protein (647aa)
DNA polymerase I-3'-5' exonuclease and polymerase domains {ECO:0000313|EMBL:CBL35768.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBL35768.1};; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
DNA polymerase I-3'-5' exonuclease and polymerase domains (EC:2.7.7.7)
DNA polymerase I-3'-5' exonuclease and polymerase domains n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MPT2_9FIRM
L3_072_000M1_scaffold_609_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9825..10262
DNA (438bp) protein (146aa)
Putative uncharacterized protein id=4072774 bin=GWF2_Clostridiales_38_85 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Uncharacterized protein {ECO:0000313|EMBL:CDC46949.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_072_000M1_scaffold_609_13
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10246..10569
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NJ41_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS05371.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L3_072_000M1_scaffold_609_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10569..12845
DNA (2277bp) protein (759aa)
Phage/plasmid DNA primase putative n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RVB1_9FIRM
Phage/plasmid DNA primase putative {ECO:0000313|EMBL:CDC46951.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
phage/plasmid DNA primase
L3_072_000M1_scaffold_609_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12988..13269
DNA (282bp) protein (94aa)
VRR-NUC domain-containing protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SK38_9FIRM
VRR-NUC domain-containing protein {ECO:0000313|EMBL:CDC46952.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
VRR-NUC domain-containing protein
L3_072_000M1_scaffold_609_16
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13250..14614
DNA (1365bp) protein (455aa)
Protein, SNF2 family n=4 Tax=Enterococcus faecium RepID=J6CM00_ENTFC
Protein, SNF2 family {ECO:0000313|EMBL:EJX40236.1}; TaxID=1134839 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium R501.;"
SNF2 family helicase
L3_072_000M1_scaffold_609_17
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14672..15133
DNA (462bp) protein (154aa)
Uncharacterized protein n=3 Tax=Thermoanaerobacter RepID=B0K6Q8_THEPX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM67826.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_072_000M1_scaffold_609_18
unknown

Not on your lists

15133..15312
DNA (180bp) protein (60aa)

This feature has no annotations

L3_072_000M1_scaffold_609_19
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

15257..15616
DNA (360bp) protein (120aa)
HNH endonuclease domain protein n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I2W8_9FIRM
HNH endonuclease domain protein {ECO:0000313|EMBL:CDB43630.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
HNH endonuclease
L3_072_000M1_scaffold_609_20
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15737..16282
DNA (546bp) protein (182aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E4LR59_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR38686.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_072_000M1_scaffold_609_21
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16285..17067
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3AY37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81688.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
S-adenosylmethionine synthetase
L3_072_000M1_scaffold_609_22
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17064..18299
DNA (1236bp) protein (412aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
DNA methylase family protein n=1 Tax=Clostridium difficile P28 RepID=T4NWG6_CLODI
DNA methylase
L3_072_000M1_scaffold_609_23
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18292..20106
DNA (1815bp) protein (605aa)
Cytosine-specific methyltransferase n=1 Tax=Clostridium sp. BNL1100 RepID=H2J9Y5_9CLOT
site-specific DNA methylase
Site-specific DNA methylase {ECO:0000313|EMBL:AEY67720.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
L3_072_000M1_scaffold_609_24
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20198..20899
DNA (702bp) protein (234aa)
Virulence-related protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ER16_9FIRM
Virulence-related protein {ECO:0000313|EMBL:CDE04703.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
virulence-like protein
L3_072_000M1_scaffold_609_25
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20890..21126
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ET71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE04697.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L3_072_000M1_scaffold_609_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21116..21292
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J733_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44707.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
virulence-related protein
L3_072_000M1_scaffold_609_27
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21431..21691
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71013.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
L3_072_000M1_scaffold_609_28
unknown

Not on your lists

21710..21898
DNA (189bp) protein (63aa)

This feature has no annotations

L3_072_000M1_scaffold_609_29
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22049..23614
DNA (1566bp) protein (522aa)
Putative phage terminase large subunit n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CIH0_9FIRM
Putative phage terminase large subunit {ECO:0000313|EMBL:CDA71311.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
phage terminase-like protein large subunit
L3_072_000M1_scaffold_609_30
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23627..24403
DNA (777bp) protein (259aa)
reductase n=1 Tax=Dorea sp. 5-2 RepID=UPI0003B481B9
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase {ECO:0000313|EMBL:KJF38919.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
Displaying items 1-30 of 51 in total

View Taxonomy