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L3_072_000M1_scaffold_761

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_761_1
unknown

Not on your lists

comp(3..62)
DNA (60bp) protein (20aa)

This feature has no annotations

L3_072_000M1_scaffold_761_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(174..839)
DNA (666bp) protein (222aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=B5CSP1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31855.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_072_000M1_scaffold_761_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1226..2149)
DNA (924bp) protein (308aa)
Elongation factor Ts n=2 Tax=Ruminococcus lactaris RepID=B5CSP0_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
translation elongation factor Ts (EF-Ts)
L3_072_000M1_scaffold_761_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2353..3105)
DNA (753bp) protein (251aa)
30S ribosomal protein S2 n=2 Tax=Ruminococcus lactaris RepID=B5CSN9_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
SSU ribosomal protein S2P
L3_072_000M1_scaffold_761_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3107..3241)
DNA (135bp) protein (45aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CSN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31852.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_072_000M1_scaffold_761_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3272..4669)
DNA (1398bp) protein (466aa)
Transporter n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSN7_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Na+-dependent transporters of the SNF family
L3_072_000M1_scaffold_761_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4884..5141
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24384.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_072_000M1_scaffold_761_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5414..6358)
DNA (945bp) protein (315aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8CAD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24383.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Transcriptional regulator
L3_072_000M1_scaffold_761_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6505..6789
DNA (285bp) protein (95aa)
Azaleucine resistance protein AzlC n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CB99_9FIRM
Putative azaleucine resistance protein AzlC {ECO:0000313|EMBL:EDY31847.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted branched-chain amino acid permease (azaleucine resistance)
L3_072_000M1_scaffold_761_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6800..7438
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CBI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24380.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_072_000M1_scaffold_761_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7520..9484)
DNA (1965bp) protein (655aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24379.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ABC-type multidrug transport system, ATPase and permease components
L3_072_000M1_scaffold_761_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9432..11180)
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24378.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ABC-type multidrug transport system, ATPase and permease components
L3_072_000M1_scaffold_761_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11174..11659)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CB94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24377.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Transcriptional regulators
L3_072_000M1_scaffold_761_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11922..12866)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CCB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24376.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Predicted permeases
L3_072_000M1_scaffold_761_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12871..16458)
DNA (3588bp) protein (1196aa)
ABC transporter, ATP-binding protein n=2 Tax=Ruminococcus lactaris RepID=B5CSM7_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDY31841.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_072_000M1_scaffold_761_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16652..19141)
DNA (2490bp) protein (830aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSM6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31840.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_072_000M1_scaffold_761_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19275..20774)
DNA (1500bp) protein (500aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.13 1.4.1.14)
Pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Ruminococcus lactaris RepID=B5CSM5_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EDY31839.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_072_000M1_scaffold_761_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20788..24132)
DNA (3345bp) protein (1115aa)
Glutamate synthase domain 2 (EC:1.4.1.14 1.4.1.13)
Class II glutamine amidotransferase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSM4_9FIRM
Class II glutamine amidotransferase {ECO:0000313|EMBL:EDY31838.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_072_000M1_scaffold_761_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24205..25323)
DNA (1119bp) protein (373aa)
Glutamate synthase domain 2 (EC:1.4.1.14 1.4.1.13)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CB88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24372.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_072_000M1_scaffold_761_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25627..26550)
DNA (924bp) protein (308aa)
CAAX amino terminal protease family protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSM3_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EDY31837.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted metal-dependent membrane protease
L3_072_000M1_scaffold_761_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26551..27744)
DNA (1194bp) protein (398aa)
DHHA1 domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSM2_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:EDY31836.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain
L3_072_000M1_scaffold_761_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27751..29517)
DNA (1767bp) protein (589aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSM1_9FIRM
L3_072_000M1_scaffold_761_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29746..30768
DNA (1023bp) protein (341aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
apurinic endonuclease (APN1) (EC:3.1.21.2)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAB9_9FIRM
L3_072_000M1_scaffold_761_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30986..33598)
DNA (2613bp) protein (871aa)
Cna protein B-type domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSL9_9FIRM
Cna protein B-type domain protein {ECO:0000313|EMBL:EDY31833.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Cna B domain-containing protein
L3_072_000M1_scaffold_761_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33595..34545)
DNA (951bp) protein (317aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CSL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24366.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_072_000M1_scaffold_761_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34785..35342)
DNA (558bp) protein (186aa)
Elongation factor P n=2 Tax=Ruminococcus lactaris RepID=B5CSL7_9FIRM
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
translation elongation factor P (EF-P)
L3_072_000M1_scaffold_761_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35453..35959)
DNA (507bp) protein (169aa)
HAD phosphatase, family IIIA {ECO:0000313|EMBL:EDY31830.1}; EC=3.1.3.- {ECO:0000313|EMBL:EDY31830.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
HAD phosphatase, family IIIA n=2 Tax=Ruminococcus lactaris RepID=B5CSL6_9FIRM
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
L3_072_000M1_scaffold_761_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35943..36734)
DNA (792bp) protein (264aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=2 Tax=Ruminococcus lactaris RepID=B5CSL5_9FIRM
L3_072_000M1_scaffold_761_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36849..37625)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CB77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24362.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
N-acetylmuramoyl-L-alanine amidase
L3_072_000M1_scaffold_761_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37807..39261)
DNA (1455bp) protein (485aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=2 Tax=Ruminococcus lactaris RepID=B5CSL3_9FIRM
Displaying items 1-30 of 45 in total

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