ggKbase home page

L3_072_000M1_scaffold_807

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_807_1
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..736
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:628 RepID=R7MIM7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE99587.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
L3_072_000M1_scaffold_807_2
Clostridium sp. CAG:762, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1432..1971)
DNA (540bp) protein (180aa)
Transposase n=1 Tax=Clostridium sp. CAG:762 RepID=R5TDX7_9CLOT
Transposase {ECO:0000313|EMBL:CCZ57226.1}; TaxID=1262837 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:762.;"
transposase
L3_072_000M1_scaffold_807_3
Clostridium sp. CAG:762, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2117..2578)
DNA (462bp) protein (154aa)
Transposase n=1 Tax=Clostridium sp. CAG:762 RepID=R5TDX7_9CLOT
Transposase {ECO:0000313|EMBL:CCZ57226.1}; TaxID=1262837 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:762.;"
L3_072_000M1_scaffold_807_4
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2763..4778
DNA (2016bp) protein (672aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
topA; DNA topoisomerase 1 (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Clostridium sp. CAG:628 RepID=R7MIM1_9CLOT
L3_072_000M1_scaffold_807_5
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4841..5266
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:628 RepID=R7MES0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE99579.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
L3_072_000M1_scaffold_807_6
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5266..5586
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:628 RepID=R7MHX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE99578.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
L3_072_000M1_scaffold_807_7
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6346..7995
DNA (1650bp) protein (550aa)
Ribonuclease J 2 (EC:3.1.-.-)
Ribonuclease J 2 n=1 Tax=Clostridium sp. CAG:628 RepID=R7MGS2_9CLOT
Ribonuclease J 2 {ECO:0000313|EMBL:CDE99576.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
L3_072_000M1_scaffold_807_8
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8005..9129
DNA (1125bp) protein (375aa)
cysteine desulfurase (EC:2.8.1.7)
Aminotransferase class V n=1 Tax=Clostridium sp. CAG:628 RepID=R7MFZ4_9CLOT
Aminotransferase class V {ECO:0000313|EMBL:CDE99575.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
L3_072_000M1_scaffold_807_9
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9133..10302
DNA (1170bp) protein (390aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
Probable tRNA sulfurtransferase n=1 Tax=Clostridium sp. CAG:628 RepID=R7MER7_9CLOT
thiamine biosynthesis protein ThiI
L3_072_000M1_scaffold_807_10
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10355..11005
DNA (651bp) protein (217aa)
Filamentation protein Fic1 n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LDF2_ACEWD
Death-on-curing protein {ECO:0000313|EMBL:KGP77197.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
fic1; filamentation protein Fic1
L3_072_000M1_scaffold_807_11
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11166..11456
DNA (291bp) protein (97aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Clostridium sp. CAG:628 RepID=R7MIK9_9CLOT
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000313|EMBL:CDE99572.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
L3_072_000M1_scaffold_807_12
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11456..12889
DNA (1434bp) protein (478aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.6 6.3.5.7 6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Clostridium sp. CAG:628 RepID=R7MER1_9CLOT
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000313|EMBL:CDE99569.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
L3_072_000M1_scaffold_807_13
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12891..14312
DNA (1422bp) protein (474aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Clostridium sp. CAG:628 RepID=R7MIK3_9CLOT
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
L3_072_000M1_scaffold_807_14
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14456..14632
DNA (177bp) protein (59aa)
Protein translocase subunit SecE n=1 Tax=Clostridium sp. CAG:628 RepID=R7MDA9_9CLOT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
secE; preprotein translocase, SecE subunit
L3_072_000M1_scaffold_807_15
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14634..15173
DNA (540bp) protein (180aa)
Transcription termination/antitermination protein NusG n=1 Tax=Clostridium sp. CAG:628 RepID=R7MFE4_9CLOT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
nusG; transcription antitermination protein NusG
L3_072_000M1_scaffold_807_16
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15199..15474)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:628 RepID=R7MEQ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE99564.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
L3_072_000M1_scaffold_807_17
unknown

Not on your lists

15660..16022
DNA (363bp) protein (121aa)

This feature has no annotations

L3_072_000M1_scaffold_807_18
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16108..16515)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:628 RepID=R7MDZ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE99294.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
hypothetical protein
L3_072_000M1_scaffold_807_19
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16554..18026)
DNA (1473bp) protein (491aa)
Stage IV sporulation protein A n=1 Tax=Clostridium sp. CAG:628 RepID=R7MH87_9CLOT
Stage IV sporulation protein A {ECO:0000313|EMBL:CDE99293.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
stage IV sporulation protein A
L3_072_000M1_scaffold_807_20
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18240..18512
DNA (273bp) protein (91aa)
DNA-binding protein HU n=1 Tax=Clostridium sp. CAG:628 RepID=R7MF99_9CLOT
DNA-binding protein HU {ECO:0000313|EMBL:CDE99295.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
HU family DNA-binding protein
L3_072_000M1_scaffold_807_21
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18553..19635
DNA (1083bp) protein (361aa)
CCA-adding enzyme n=1 Tax=Clostridium sp. CAG:628 RepID=R7MG28_9CLOT
CCA-adding enzyme {ECO:0000313|EMBL:CDE99296.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
cca; CCA-adding enzyme (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase)
L3_072_000M1_scaffold_807_22
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19622..20212
DNA (591bp) protein (197aa)
DNA replication protein dnaD n=1 Tax=Clostridium sp. CAG:628 RepID=R7MHW4_9CLOT
DNA replication protein dnaD {ECO:0000313|EMBL:CDE99297.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
primosome subunit DnaD
L3_072_000M1_scaffold_807_23
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20184..20834
DNA (651bp) protein (217aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
Endonuclease III n=1 Tax=Clostridium sp. CAG:628 RepID=R7MH90_9CLOT
endonuclease III
L3_072_000M1_scaffold_807_24
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20907..22145
DNA (1239bp) protein (413aa)
Cell division protein ftsA n=1 Tax=Clostridium sp. CAG:628 RepID=R7MFA2_9CLOT
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
cell division protein FtsA
L3_072_000M1_scaffold_807_25
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22157..23209
DNA (1053bp) protein (351aa)
Cell division protein FtsZ n=1 Tax=Clostridium sp. CAG:628 RepID=R7ME07_9CLOT
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
cell division protein FtsZ
L3_072_000M1_scaffold_807_26
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23279..23818
DNA (540bp) protein (180aa)
Ribosome-recycling factor n=1 Tax=Clostridium sp. CAG:628 RepID=R7MEA4_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
ribosome recycling factor
L3_072_000M1_scaffold_807_27
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25440..27065
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:628 RepID=R7ME79_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE98681.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
L3_072_000M1_scaffold_807_28
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27182..27691
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:628 RepID=R7MIB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE99693.1}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
hypothetical protein
L3_072_000M1_scaffold_807_29
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27705..29429
DNA (1725bp) protein (575aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
DNA primase n=1 Tax=Clostridium sp. CAG:628 RepID=R7MF38_9CLOT
dnaG; DNA primase
L3_072_000M1_scaffold_807_30
Clostridium sp. CAG:628, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29423..30691
DNA (1269bp) protein (423aa)
RNA polymerase sigma factor SigA n=1 Tax=Clostridium sp. CAG:628 RepID=R7MGD1_9CLOT
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262829 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:628.;"
sigA; RNA polymerase sigma factor
Displaying items 1-30 of 58 in total

View Taxonomy