ggKbase home page

L3_072_000M1_scaffold_852

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_852_1
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

107..982
DNA (876bp) protein (292aa)
Amino acid ABC transporter amino acid-binding protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RW51_9FIRM
Amino acid ABC transporter amino acid-binding protein {ECO:0000313|EMBL:CCZ45465.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
polar amino acid ABC transporter amino acid-binding protein
L3_072_000M1_scaffold_852_2
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

1083..1790
DNA (708bp) protein (236aa)
Amino acid ABC transporter permease protein His/Glu/Gln/Arg/opine family n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S3N0_9FIRM
Amino acid ABC transporter permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:CCZ45464.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
amino acid ABC transporter permease
L3_072_000M1_scaffold_852_3
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

1777..2517
DNA (741bp) protein (247aa)
sulfate-transporting ATPase (EC:3.6.3.25)
Sulfate-transporting ATPase n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RXF1_9FIRM
Sulfate-transporting ATPase {ECO:0000313|EMBL:CCZ45463.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
L3_072_000M1_scaffold_852_4
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2618..3295
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Z7I1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL02895.1}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
putative DNA alkylation repair enzyme
L3_072_000M1_scaffold_852_5
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

3305..4576
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SKK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ45467.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_072_000M1_scaffold_852_6
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

4590..5738
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SFC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ45466.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
aspartate aminotransferase
L3_072_000M1_scaffold_852_7
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(5957..7354)
DNA (1398bp) protein (466aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AX93_9FIRM
HAMP domain protein
L3_072_000M1_scaffold_852_8
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(7358..8029)
DNA (672bp) protein (224aa)
Transcriptional activator protein IrlR n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WDY8_FUSMR
Transcriptional activator protein IrlR {ECO:0000313|EMBL:EEO36094.1}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;"
DNA-binding response regulator
L3_072_000M1_scaffold_852_9
unknown

Not on your lists

comp(8116..8412)
DNA (297bp) protein (99aa)

This feature has no annotations

L3_072_000M1_scaffold_852_10
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(8527..8973)
DNA (447bp) protein (149aa)
tadA; tRNA-specific adenosine deaminase TadA (EC:3.5.4.-)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TSD1_9FIRM
L3_072_000M1_scaffold_852_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9027..11441)
DNA (2415bp) protein (805aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B139_9CLOT
L3_072_000M1_scaffold_852_12
unknown

Not on your lists

comp(11561..11674)
DNA (114bp) protein (38aa)

This feature has no annotations

L3_072_000M1_scaffold_852_13
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11809..12588
DNA (780bp) protein (260aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
HisJ family histidinol phosphate phosphatase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M9Q9_9FIRM
HisJ family histidinol phosphate phosphatase {ECO:0000313|EMBL:EOS64612.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_072_000M1_scaffold_852_14
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(12585..13256)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ILY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY43143.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_072_000M1_scaffold_852_15
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13348..14376)
DNA (1029bp) protein (343aa)
prs; ribose-phosphate pyrophosphokinase Prs (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7B5_9CLOT
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CCX50119.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_852_16
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14611..15423)
DNA (813bp) protein (271aa)
PHP domain protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AJZ1_9CLOT
PHP domain protein {ECO:0000313|EMBL:CCX41117.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
phosphotransferase domain-containing protein
L3_072_000M1_scaffold_852_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15480..17555)
DNA (2076bp) protein (692aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium sp. CAG:226 RepID=R5B867_9CLOT
L3_072_000M1_scaffold_852_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18079..21201
DNA (3123bp) protein (1041aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BD21_9CLOT
L3_072_000M1_scaffold_852_19
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21260..21541)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LUW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS62303.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
transcriptional regulator
L3_072_000M1_scaffold_852_20
unknown

Not on your lists

21663..21977
DNA (315bp) protein (105aa)

This feature has no annotations

L3_072_000M1_scaffold_852_21
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22014..22427)
DNA (414bp) protein (138aa)
Toxin secretion/phage lysis holin n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AK44_9CLOT
Toxin secretion/phage lysis holin {ECO:0000313|EMBL:CCX41172.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
toxin secretion/phage lysis holin
L3_072_000M1_scaffold_852_22
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22417..23001)
DNA (585bp) protein (195aa)
NLP/P60 protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B8G4_9CLOT
NLP/P60 protein {ECO:0000313|EMBL:CCX50514.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_852_23
unknown

Not on your lists

comp(23016..23255)
DNA (240bp) protein (80aa)

This feature has no annotations

L3_072_000M1_scaffold_852_24
unknown

Not on your lists

comp(23252..23587)
DNA (336bp) protein (112aa)

This feature has no annotations

L3_072_000M1_scaffold_852_25
unknown

Not on your lists

comp(23594..24010)
DNA (417bp) protein (139aa)

This feature has no annotations

L3_072_000M1_scaffold_852_26
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24032..24595)
DNA (564bp) protein (188aa)
Phage pre-neck appendage-like protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5H2_9CLOT
Phage pre-neck appendage-like protein {ECO:0000313|EMBL:CCX50513.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_852_27
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24606..25502)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BCG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50512.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_852_28
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25533..25700)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AIC3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA50750.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
L3_072_000M1_scaffold_852_29
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25701..27125)
DNA (1425bp) protein (475aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4Q5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50510.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_852_30
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27131..27673)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B8F9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50509.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Displaying items 1-30 of 37 in total

View Taxonomy