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L3_072_000M1_scaffold_863

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_863_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(190..645)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y8C8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14647.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_863_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(652..1989)
DNA (1338bp) protein (446aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=4 Tax=Parabacteroides RepID=A7ADH8_9PORP
L3_072_000M1_scaffold_863_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2001..2411)
DNA (411bp) protein (137aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADH7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14649.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_863_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2418..3059)
DNA (642bp) protein (214aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=4 Tax=Parabacteroides RepID=A7ADH6_9PORP
L3_072_000M1_scaffold_863_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3176..3868)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XEB0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14651.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
amidophosphoribosyltransferase
L3_072_000M1_scaffold_863_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3843..4334)
DNA (492bp) protein (164aa)
Regulatory protein RecX n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y8D2_9PORP
Regulatory protein RecX {ECO:0000313|EMBL:CDD14652.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
regulatory protein
L3_072_000M1_scaffold_863_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4331..5179)
DNA (849bp) protein (283aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Release factor glutamine methyltransferase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WTJ9_9PORP
prmC; protein-(glutamine-N5) methyltransferase
L3_072_000M1_scaffold_863_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5688..8507
DNA (2820bp) protein (940aa)
hsdR_3; type I site-specific deoxyribonuclease, HsdR family (EC:3.1.21.3)
Type I site-specific deoxyribonuclease HsdR family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X687_9PORP
Type I site-specific deoxyribonuclease HsdR family {ECO:0000313|EMBL:CDD14654.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_072_000M1_scaffold_863_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8518..9216
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z598_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06541.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
T5orf172 domain-containing protein
L3_072_000M1_scaffold_863_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9221..10774
DNA (1554bp) protein (518aa)
Type I restriction-modification system, M subunit n=2 Tax=Parabacteroides RepID=K5Z616_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14656.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
typeI restriction enzyme EcoR124II M protein
L3_072_000M1_scaffold_863_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10793..11848
DNA (1056bp) protein (352aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5YU22_9PORP
Toxin-antitoxin system toxin component Fic family {ECO:0000313|EMBL:CDD14657.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_863_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11940..12599
DNA (660bp) protein (220aa)
Uncharacterized protein (Fragment) n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y162_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06762.1}; Flags: Fragment;; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
restriction endonuclease S subunit
L3_072_000M1_scaffold_863_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12709..12990
DNA (282bp) protein (94aa)
Uncharacterized protein (Fragment) n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YRT8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN05694.1}; Flags: Fragment;; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
type I restriction endonuclease S subunit
L3_072_000M1_scaffold_863_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12983..13573)
DNA (591bp) protein (197aa)
Restriction endonuclease S subunits (EC:3.1.21.3)
Uncharacterized protein (Fragment) n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZQK6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN05693.1}; Flags: Fragment;; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_072_000M1_scaffold_863_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13533..14087)
DNA (555bp) protein (185aa)
Uncharacterized protein (Fragment) n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZSZ3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06538.1}; Flags: Fragment;; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
restriction modification system DNA specificity subunit
L3_072_000M1_scaffold_863_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14168..15091
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Z5Z6_9PORP
Transposase {ECO:0000313|EMBL:CDD13430.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transposase
L3_072_000M1_scaffold_863_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15323..15574)
DNA (252bp) protein (84aa)
Tyrosine type site-specific recombinase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XAR2_9PORP
Tyrosine type site-specific recombinase {ECO:0000313|EMBL:CDD13431.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
tyrosine type site-specific recombinase
L3_072_000M1_scaffold_863_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15795..16838
DNA (1044bp) protein (348aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y4W7_9PORP
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
riboflavin biosynthesis protein ribD
L3_072_000M1_scaffold_863_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16954..18336
DNA (1383bp) protein (461aa)
BNR/Asp-box repeat protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQ33_9PORP
BNR/Asp-box repeat protein {ECO:0000313|EMBL:CDD13433.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_863_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18424..19143
DNA (720bp) protein (240aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADH0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87112.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_863_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19161..19904
DNA (744bp) protein (248aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Isoprenyl transferase n=4 Tax=Parabacteroides RepID=A7ADG9_9PORP
UDP pyrophosphate synthetase
L3_072_000M1_scaffold_863_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19919..22606
DNA (2688bp) protein (896aa)
Outer membrane protein assembly complex, YaeT protein n=2 Tax=Parabacteroides merdae RepID=A7ADG8_9PORP
Outer membrane protein assembly complex, YaeT protein {ECO:0000313|EMBL:EDN87110.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane protein
L3_072_000M1_scaffold_863_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22815..23330
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQ39_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13438.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cationic outer membrane protein OmpH
L3_072_000M1_scaffold_863_24
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23403..23900
DNA (498bp) protein (166aa)
Outer membrane protein n=6 Tax=Parabacteroides RepID=A7ADG5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN15024.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
cationic outer membrane protein OmpH
L3_072_000M1_scaffold_863_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24054..24890
DNA (837bp) protein (279aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Glutamate racemase n=3 Tax=Parabacteroides merdae RepID=A7ADG4_9PORP
glutamate racemase
L3_072_000M1_scaffold_863_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24967..25335)
DNA (369bp) protein (123aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7ADG3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87105.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_863_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25346..26596)
DNA (1251bp) protein (417aa)
Peptidase, M23 family n=2 Tax=Parabacteroides merdae RepID=A7ADG2_9PORP
Peptidase, M23 family {ECO:0000313|EMBL:EDN87104.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
metalloendopeptidase-like membrane protein
L3_072_000M1_scaffold_863_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26593..26760)
DNA (168bp) protein (56aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADG1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13441.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_072_000M1_scaffold_863_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27144..27407)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BUV7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06747.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_072_000M1_scaffold_863_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27732..28157
DNA (426bp) protein (142aa)
META domain protein n=3 Tax=Parabacteroides RepID=A7ADF7_9PORP
META domain protein {ECO:0000313|EMBL:CDD11461.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
Displaying items 1-30 of 48 in total

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