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L3_072_000M1_scaffold_945

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_945_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..795
DNA (795bp) protein (265aa)
Peptidase, U32 family {ECO:0000313|EMBL:EDY33634.1}; EC=3.4.-.- {ECO:0000313|EMBL:EDY33634.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Collagenase and related proteases (EC:3.4.-.-)
Peptidase, U32 family n=2 Tax=Ruminococcus lactaris RepID=B5CLR6_9FIRM
L3_072_000M1_scaffold_945_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

808..2325
DNA (1518bp) protein (506aa)
Cell cycle protein, FtsW/RodA/SpoVE family n=2 Tax=Ruminococcus lactaris RepID=B5CLR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19818.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Bacterial cell division membrane protein
L3_072_000M1_scaffold_945_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2363..3712
DNA (1350bp) protein (450aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Penicillin-binding protein, transpeptidase domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CLR8_9FIRM
Cell division protein FtsI/penicillin-binding protein 2
L3_072_000M1_scaffold_945_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3735..4088
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8BZ90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19816.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_072_000M1_scaffold_945_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4085..5038
DNA (954bp) protein (318aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CLS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33638.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Protein of unknown function (DUF2953).
L3_072_000M1_scaffold_945_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5058..5459
DNA (402bp) protein (134aa)
Sporulation protein YtfJ n=2 Tax=Ruminococcus lactaris RepID=B5CLS1_9FIRM
Sporulation protein YtfJ {ECO:0000313|EMBL:EDY33639.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_072_000M1_scaffold_945_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5526..5657)
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BXB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19813.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_072_000M1_scaffold_945_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5780..5965)
DNA (186bp) protein (62aa)
50S ribosomal protein L28 n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BYA8_9FIRM
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
LSU ribosomal protein L28P
L3_072_000M1_scaffold_945_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6147..6509
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CLS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33641.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_072_000M1_scaffold_945_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6522..8183
DNA (1662bp) protein (554aa)
DAK2 domain fusion protein YloV n=2 Tax=Ruminococcus lactaris RepID=B5CLS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19810.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Dak phosphatase
L3_072_000M1_scaffold_945_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8294..10354
DNA (2061bp) protein (687aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BXF0_9FIRM
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:ETD19809.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_072_000M1_scaffold_945_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10549..10755
DNA (207bp) protein (69aa)
Small, acid-soluble spore protein, alpha/beta type n=2 Tax=Ruminococcus lactaris RepID=B5CLS7_9FIRM
Small, acid-soluble spore protein C1 {ECO:0000313|EMBL:ETD19808.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Small, acid-soluble spore proteins, alpha/beta type.
L3_072_000M1_scaffold_945_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10922..11491
DNA (570bp) protein (190aa)
RNA methyltransferase, RsmD family {ECO:0000313|EMBL:EDY33646.1}; EC=2.1.1.- {ECO:0000313|EMBL:EDY33646.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
RNA methyltransferase, RsmD family n=2 Tax=Ruminococcus lactaris RepID=B5CLS8_9FIRM
RNA methyltransferase, RsmD family
L3_072_000M1_scaffold_945_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11485..11979
DNA (495bp) protein (165aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
pantetheine-phosphate adenylyltransferase, bacterial (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=2 Tax=Ruminococcus lactaris RepID=B5CLS9_9FIRM
L3_072_000M1_scaffold_945_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11979..12572
DNA (594bp) protein (198aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CLT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33648.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_072_000M1_scaffold_945_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12608..13516)
DNA (909bp) protein (303aa)
Putative sporulation integral membrane protein YlbJ n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CLT1_9FIRM
Putative sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:EDY33649.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_072_000M1_scaffold_945_17
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13685..14581
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_1_57FAA RepID=F7JD03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26742.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Membrane proteins related to metalloendopeptidases
L3_072_000M1_scaffold_945_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14651..16033
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BZ76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19801.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_072_000M1_scaffold_945_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16030..16770
DNA (741bp) protein (247aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ribosomal small subunit pseudouridine synthase A (EC:5.4.99.- 5.4.99.12)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BYD6_9FIRM
L3_072_000M1_scaffold_945_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16767..18647
DNA (1881bp) protein (627aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BXE1_9FIRM
UPF0313 protein HMPREF1202_02013 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_072_000M1_scaffold_945_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18655..19413
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BX97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19798.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Short-chain dehydrogenases of various substrate specificities
L3_072_000M1_scaffold_945_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19450..20028
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BY97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19797.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_072_000M1_scaffold_945_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20057..21052
DNA (996bp) protein (332aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BZ72_9FIRM
L3_072_000M1_scaffold_945_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21054..21587
DNA (534bp) protein (178aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Holliday junction resolvase RecU n=2 Tax=Ruminococcus lactaris RepID=B5CLU1_9FIRM
Penicillin-binding protein-related factor A, putative recombinase
L3_072_000M1_scaffold_945_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21669..22919
DNA (1251bp) protein (417aa)
ATP phosphoribosyltransferase regulatory subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CLU2_9FIRM
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_072_000M1_scaffold_945_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22933..23577
DNA (645bp) protein (215aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CLU3_9FIRM
L3_072_000M1_scaffold_945_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23580..24869
DNA (1290bp) protein (430aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BY94_9FIRM
L3_072_000M1_scaffold_945_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24886..25479
DNA (594bp) protein (198aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|SAAS:SAAS00218099}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|SAAS:SAAS00263879};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BZ67_9FIRM
L3_072_000M1_scaffold_945_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25532..26815
DNA (1284bp) protein (428aa)
phosphoribosyl-ATP pyrophosphohydrolase (EC:3.6.1.31 3.5.4.19)
Phosphoribosyl-ATP diphosphatase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BYC6_9FIRM
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_072_000M1_scaffold_945_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27055..27384
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CLU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33665.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Displaying items 1-30 of 50 in total

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