ggKbase home page

L3_072_000M1_scaffold_2180_17

Organism: dasL3_072_000M1_concoct_101_fa

near complete RP 47 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 15 / 38 MC: 1
Location: comp(11206..12066)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.4
  • Coverage: 284.0
  • Bit_score: 239
  • Evalue 5.00e-60
tRNA pseudouridine synthase B n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GRN5_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 45.4
  • Coverage: 284.0
  • Bit_score: 239
  • Evalue 3.60e-60
tRNA pseudouridine synthase B similarity KEGG
DB: KEGG
  • Identity: 42.3
  • Coverage: 284.0
  • Bit_score: 224
  • Evalue 2.00e-56

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Firmicutes bacterium CAG:552 → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 861
ATGAACGGAATAATAAACGTTTATAAGCCAAAAGATTGTACAAGTCAGCATGTAGTAAGTGTTGTAAGAAAGTTTTTGCACACTAAATCCGTCGGGCATATGGGAACGCTCGATCCGCAAGGCGAAGGCGTGTTGCCGATAGGAGTCGGAAAAGCGACAAGACTTTTCGATCTGCTTCTTAAAAAAGATAAAATTTACGAAGCGAAATTTGATTTCGGTTACGAAACCGATACATTGGACAAGGACGGAATGACAATCGGACAAACCGATAGAATTCCGAGTGAAGAAGAAATTATTGCTGTTTTACCTGCATTTATCGGTAAAATCGAGCAAATGCCCCCAAAATACAGTGCCAAAAACGTTGGCGGAGTACGTGCGTACGATTTGGCGCGCCGCGGTGTTGATTTTGAGCTTAAACCGGCGTCGGTCGAAATATATTCGCTCGATTTAATCGAACATTGCGGCGGTAACGAATATCTGTTTCGTATTCATTGCTCTGCAGGTACATATATTCGCAGCCTTTGCCGCGATATTGCTTATAAAATAAGTTCGCTGGCAACCATGACTGCGATTAAGCGCACAAAAAGCGGCGATTTTACCATTAAAAACGCTCTGGATTTGGATAAAATAAAAGAACTTGGCGAGAAATCCATAATACCGGTCGAAAAAGTTCTGGAAAAATATCCAAAGGTTAATTTTCCGCCCGAACTTTATAAAAAAGTTTCGTGCGGAGTTGCATTTCCTGTCGATTTTGTGCTTGCCGAGCCGTTTACGGTATATTGCAACAATGAATTTTTCGGATTGGGTACGATAAACGAGGGAATTTTTTCCATCAAAACATATTTGCGAGATAATGATTAA
PROTEIN sequence
Length: 287
MNGIINVYKPKDCTSQHVVSVVRKFLHTKSVGHMGTLDPQGEGVLPIGVGKATRLFDLLLKKDKIYEAKFDFGYETDTLDKDGMTIGQTDRIPSEEEIIAVLPAFIGKIEQMPPKYSAKNVGGVRAYDLARRGVDFELKPASVEIYSLDLIEHCGGNEYLFRIHCSAGTYIRSLCRDIAYKISSLATMTAIKRTKSGDFTIKNALDLDKIKELGEKSIIPVEKVLEKYPKVNFPPELYKKVSCGVAFPVDFVLAEPFTVYCNNEFFGLGTINEGIFSIKTYLRDND*