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L3_072_000M1_scaffold_2180

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_2180_1
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(50..1264)
DNA (1215bp) protein (405aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GNN1_9FIRM
L3_072_000M1_scaffold_2180_2
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(1254..2102)
DNA (849bp) protein (283aa)
5,10-methylene-tetrahydrofolate dehydrogenase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GZD1_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
L3_072_000M1_scaffold_2180_3
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(2083..2616)
DNA (534bp) protein (178aa)
N utilization substance protein B homolog n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0IL17_THETR
transcription antitermination factor NusB
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=698948 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum M0795.;"
L3_072_000M1_scaffold_2180_4
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(2641..2970)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6HMA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27047.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
hypothetical protein
L3_072_000M1_scaffold_2180_5
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(3040..3513)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GZD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27049.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
hypothetical protein
L3_072_000M1_scaffold_2180_6
unknown

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comp(3550..4068)
DNA (519bp) protein (173aa)

This feature has no annotations

L3_072_000M1_scaffold_2180_7
unknown

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comp(4061..4516)
DNA (456bp) protein (152aa)

This feature has no annotations

L3_072_000M1_scaffold_2180_8
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(4551..5684)
DNA (1134bp) protein (378aa)
Stage III sporulation protein AE n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6HMB2_9FIRM
Stage III sporulation protein AE {ECO:0000313|EMBL:CDB27052.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
spoIIIAE; stage III sporulation protein AE
L3_072_000M1_scaffold_2180_9
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(5732..6115)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GRL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27055.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
putative sporulation protein
L3_072_000M1_scaffold_2180_10
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(6124..6333)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6HMB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27057.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
stage III sporulation protein AC
L3_072_000M1_scaffold_2180_11
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

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comp(6341..6823)
DNA (483bp) protein (161aa)
Stage III sporulation protein AB n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BSC6_9FIRM
Stage III sporulation protein AB {ECO:0000313|EMBL:CDD68680.1}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
L3_072_000M1_scaffold_2180_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6820..7704)
DNA (885bp) protein (295aa)
Stage III sporulation protein AA n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VSZ6_CLOBO
Stage III sporulation protein AA {ECO:0000313|EMBL:EES91462.1}; TaxID=592027 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum D str. 1873.;"
stage III sporulation protein AA
L3_072_000M1_scaffold_2180_13
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(7863..8423)
DNA (561bp) protein (187aa)
Elongation factor P n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GNQ0_9FIRM
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
translation elongation factor P (EF-P)
L3_072_000M1_scaffold_2180_14
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(8433..9470)
DNA (1038bp) protein (346aa)
Putative aminopeptidase n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GZE9_9FIRM
Putative aminopeptidase {ECO:0000313|EMBL:CDB27069.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
Aminopeptidase YpdF (MP-, MA-, MS-, AP-,NP-specific)
L3_072_000M1_scaffold_2180_15
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(9514..10359)
DNA (846bp) protein (282aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6H0S2_9FIRM
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:CDB27071.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
xylose isomerase domain-containing protein
L3_072_000M1_scaffold_2180_16
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

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comp(10362..11213)
DNA (852bp) protein (284aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
RibF; bifunctional riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BR59_9FIRM
L3_072_000M1_scaffold_2180_17
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(11206..12066)
DNA (861bp) protein (287aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
tRNA pseudouridine synthase B n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GRN5_9FIRM
tRNA pseudouridine synthase B
L3_072_000M1_scaffold_2180_18
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(12063..13001)
DNA (939bp) protein (313aa)
Phosphoesterase RecJ domain protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6H0S5_9FIRM
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:CDB27076.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
phosphoesterase RecJ domain-containing protein
L3_072_000M1_scaffold_2180_19
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(12985..13344)
DNA (360bp) protein (120aa)
Ribosome-binding factor A n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GNR0_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
ribosome-binding factor A
L3_072_000M1_scaffold_2180_20
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(13356..16013)
DNA (2658bp) protein (886aa)
Translation initiation factor IF-2 n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GZF6_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
translation initiation factor IF-2
L3_072_000M1_scaffold_2180_21
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(16016..16339)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6H0T0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27081.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
L3_072_000M1_scaffold_2180_22
Peptostreptococcus sp. MV1, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16323..16604)
DNA (282bp) protein (94aa)
Ribosomal protein L7Ae family protein n=1 Tax=Clostridium sp. CAG:349 RepID=R6WCT9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF14778.1}; TaxID=1219626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus sp. MV1.;"
hypothetical protein
L3_072_000M1_scaffold_2180_23
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(16608..17756)
DNA (1149bp) protein (383aa)
NusA antitermination factor n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GRP2_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
NusA antitermination factor
L3_072_000M1_scaffold_2180_24
unknown

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comp(17774..17917)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 24 items

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