ggKbase home page

L3_072_000M1_scaffold_5005

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_5005_1
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..1851)
DNA (1851bp) protein (617aa)
Peptidase U32 n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R770_9CLOT
Peptidase U32 {ECO:0000313|EMBL:EPR14283.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
peptidase U32
L3_072_000M1_scaffold_5005_2
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1966..4353)
DNA (2388bp) protein (796aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
Phenylalanine--tRNA ligase beta subunit n=7 Tax=Clostridium thermocellum RepID=A3DBX7_CLOTH
L3_072_000M1_scaffold_5005_3
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4367..5389)
DNA (1023bp) protein (341aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Clostridium sp. CAG:217 RepID=R6IN57_9CLOT
phenylalanyl-tRNA synthetase subunit alpha
L3_072_000M1_scaffold_5005_4
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5692..6858)
DNA (1167bp) protein (389aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
Probable tRNA sulfurtransferase n=3 Tax=Clostridium thermocellum RepID=THII_CLOTH
thiamine biosynthesis/tRNA modification protein ThiI
L3_072_000M1_scaffold_5005_5
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(6861..7991)
DNA (1131bp) protein (377aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GYN2_9FIRM
Cysteine desulfurase {ECO:0000313|EMBL:CDB26839.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
L3_072_000M1_scaffold_5005_6
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7988..8512)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I724_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE47256.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_072_000M1_scaffold_5005_7
unknown

Not on your lists

8708..9139
DNA (432bp) protein (144aa)

This feature has no annotations

Displaying 7 items

View Taxonomy