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L3_072_000M1_scaffold_2039

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_2039_1
unknown

Not on your lists

comp(1..186)
DNA (186bp) protein (62aa)

This feature has no annotations

L3_072_000M1_scaffold_2039_2
unknown

Not on your lists

comp(183..422)
DNA (240bp) protein (80aa)

This feature has no annotations

L3_072_000M1_scaffold_2039_3
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(436..1173)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI0002F53C1E
BRO family, N-terminal domain protein {ECO:0000313|EMBL:EDS73012.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
prophage antirepressor
L3_072_000M1_scaffold_2039_4
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1188..1364)
DNA (177bp) protein (59aa)
DNA binding domain protein, excisionase family n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JPG8_CELLD
excisionase
DNA binding domain protein, excisionase family {ECO:0000313|EMBL:ADZ82516.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_072_000M1_scaffold_2039_5
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1532..1987
DNA (456bp) protein (152aa)
XRE family transcriptional regulator n=1 Tax=Blautia producta RepID=UPI000372E828
Putative transcriptional regulator {ECO:0000313|EMBL:EXG86181.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
putative Xre family DNA-binding protein
L3_072_000M1_scaffold_2039_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1982..2560)
DNA (579bp) protein (193aa)
Predicted Zn peptidase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4Y6_9FIRM
Predicted Zn peptidase
Predicted Zn peptidase {ECO:0000313|EMBL:CBL14681.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_072_000M1_scaffold_2039_7
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2742..3236
DNA (495bp) protein (165aa)
Cell wall/surface repeat protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A887_9CLOT
Cell wall/surface repeat protein {ECO:0000313|EMBL:CCX38089.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_072_000M1_scaffold_2039_8
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3473..4534
DNA (1062bp) protein (354aa)
Phage integrase family n=1 Tax=Eubacterium sp. CAG:786 RepID=R5GYW9_9FIRM
Phage integrase family {ECO:0000313|EMBL:CCY17776.1}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
Site-specific recombinase XerD
L3_072_000M1_scaffold_2039_9
unknown

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5214..5597
DNA (384bp) protein (128aa)

This feature has no annotations

L3_072_000M1_scaffold_2039_10
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5962..6432)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IY39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS26731.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
Acetyltransferase, GNAT family
L3_072_000M1_scaffold_2039_11
Solobacterium moorei, Solobacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6845..7057)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Solobacterium moorei F0204 RepID=E7MMH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW24711.1}; TaxID=706433 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Solobacterium.;" source="Solobacterium moorei F0204.;"
L3_072_000M1_scaffold_2039_12
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7072..7536)
DNA (465bp) protein (155aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
Phosphodiesterase, MJ0936 family n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SVK9_CLOC7
phosphodiesterase, MJ0936 family
L3_072_000M1_scaffold_2039_13
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7906..8490)
DNA (585bp) protein (195aa)
cmpK; cytidylate kinase CmpK (EC:2.7.4.14)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2M6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97426.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_072_000M1_scaffold_2039_14
unknown

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comp(8512..8838)
DNA (327bp) protein (109aa)

This feature has no annotations

L3_072_000M1_scaffold_2039_15
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

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comp(8923..9885)
DNA (963bp) protein (321aa)
ribonuclease HIII n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746832
ribonuclease HIII
Tax=RBG_13_Aminicenantes_59_9_curated
L3_072_000M1_scaffold_2039_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11655..12863)
DNA (1209bp) protein (403aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
RtcB protein n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B79FEB
hypothetical protein
L3_072_000M1_scaffold_2039_17
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12941..14044)
DNA (1104bp) protein (368aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNF9_9FIRM
Peptidase {ECO:0000313|EMBL:KJF41014.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
stomatin family protein
L3_072_000M1_scaffold_2039_18
unknown

Not on your lists

comp(14200..14379)
DNA (180bp) protein (60aa)

This feature has no annotations

L3_072_000M1_scaffold_2039_19
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14558..15469)
DNA (912bp) protein (304aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40944.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_072_000M1_scaffold_2039_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15466..16719)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MK31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01963.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_2039_21
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18490..18807
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6KU20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB65607.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
hypothetical protein
L3_072_000M1_scaffold_2039_22
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18804..19394
DNA (591bp) protein (197aa)
SPFH/Band 7/PHB domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDT7_9FIRM
SPFH/Band 7/PHB domain protein {ECO:0000313|EMBL:EEF65870.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Membrane protease subunits, stomatin/prohibitin homologs
Displaying 22 items

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