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L3_072_000M1_scaffold_1184

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1184_1
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..1284
DNA (1284bp) protein (428aa)
ABC-type multidrug transport system, ATPase and permease component n=1 Tax=Clostridium sp. BNL1100 RepID=H2JIE5_9CLOT
multidrug ABC transporter ATPase and permease
ABC-type multidrug transport system, ATPase and permease component {ECO:0000313|EMBL:AEY65859.1}; Flags: Precursor;; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
L3_072_000M1_scaffold_1184_2
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1328..3028
DNA (1701bp) protein (567aa)
ABC transporter n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EPL7_CLOPA
ABC transporter family protein {ECO:0000313|EMBL:KIE46515.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
ABC transporter
L3_072_000M1_scaffold_1184_3
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3102..4283)
DNA (1182bp) protein (394aa)
aminotransferase (EC:2.6.1.-)
Aminotransferase n=1 Tax=Clostridium sp. CAG:349 RepID=R6X1N5_9CLOT
Aminotransferase {ECO:0000313|EMBL:CDD10186.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
L3_072_000M1_scaffold_1184_4
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4301..4780)
DNA (480bp) protein (160aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CX36_HALOH
RNA methyltransferase
L3_072_000M1_scaffold_1184_5
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(4801..5982)
DNA (1182bp) protein (394aa)
Aminotransferase class I and II n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZY69_MAHA5
class I and II aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:AEE95594.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_072_000M1_scaffold_1184_6
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5979..6470)
DNA (492bp) protein (164aa)
Transcriptional regulator, AsnC family n=7 Tax=Clostridium thermocellum RepID=A3DCC1_CLOTH
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABN51600.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_072_000M1_scaffold_1184_7
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6609..6935)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W090_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02800.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_1184_8
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(6969..7526)
DNA (558bp) protein (186aa)
Elongation factor P n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A160_MAHA5
translation elongation factor P (EF-P)
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_072_000M1_scaffold_1184_9
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7545..8612)
DNA (1068bp) protein (356aa)
Xaa-Pro dipeptidase {ECO:0000313|EMBL:EGK14446.1}; EC=3.4.13.9 {ECO:0000313|EMBL:EGK14446.1};; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora.;" source="Desmospora sp. 8437.;"
Xaa-Pro dipeptidase n=1 Tax=Desmospora sp. 8437 RepID=F5SAZ1_9BACL
peptidase M24
L3_072_000M1_scaffold_1184_10
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8678..9190)
DNA (513bp) protein (171aa)
HAD phosphatase, family IIIA n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZK4_9FIRM
HAD phosphatase, family IIIA {ECO:0000313|EMBL:EOS63968.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
HAD superfamily phosphatase
L3_072_000M1_scaffold_1184_11
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(9197..10438)
DNA (1242bp) protein (414aa)
FolC bifunctional protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYE6_MAHA5
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
FolC bifunctional protein {ECO:0000313|EMBL:AEE96688.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_072_000M1_scaffold_1184_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10445..13084)
DNA (2640bp) protein (880aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YK76_9FIRM
L3_072_000M1_scaffold_1184_13
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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comp(13345..14001)
DNA (657bp) protein (219aa)
CDP-alcohol phosphatidyltransferase id=4491391 bin=GWF2_Clostridiales_38_85 species=Clostridium cellulolyticum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Tax=GWF2_Clostridiales_38_85_curated
L3_072_000M1_scaffold_1184_14
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14021..14974)
DNA (954bp) protein (318aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ldh; L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EG64_9CLOT
L3_072_000M1_scaffold_1184_15
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15152..17059)
DNA (1908bp) protein (636aa)
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthetase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY07_9FIRM
NAD synthetase {ECO:0000313|EMBL:KJF41296.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_072_000M1_scaffold_1184_16
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17133..17381)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FTB3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE18544.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_1184_17
unknown

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17474..17956
DNA (483bp) protein (161aa)

This feature has no annotations

L3_072_000M1_scaffold_1184_18
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17992..18552)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037E4367
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EJF42189.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
nitrate/sulfonate/bicarbonate ABC transporter ATPase
L3_072_000M1_scaffold_1184_19
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18558..19322)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CIS6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA76558.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
binding-protein-dependent transport system inner membrane protein
L3_072_000M1_scaffold_1184_20
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19294..20328)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CYD0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA76561.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_072_000M1_scaffold_1184_21
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(20383..20646)
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RHQ2_MOOTA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC20037.1}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
L3_072_000M1_scaffold_1184_22
unknown

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20923..21573
DNA (651bp) protein (217aa)

This feature has no annotations

L3_072_000M1_scaffold_1184_23
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21544..22041)
DNA (498bp) protein (166aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
aroK; Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Caloramator australicus RC3 RepID=I7KA63_9CLOT
L3_072_000M1_scaffold_1184_24
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22050..23198)
DNA (1149bp) protein (383aa)
pheA2; P-protein (EC:5.4.99.5 4.2.1.51)
Bifunctional chorismate mutase/ prephenate dehydratase n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EGL2_CLOPA
PheA {ECO:0000313|EMBL:KGK81764.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
L3_072_000M1_scaffold_1184_25
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23213..24301)
DNA (1089bp) protein (363aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000255|HAMAP-Rule:MF_00300}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
Chorismate synthase n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=AROC_CLOSD
L3_072_000M1_scaffold_1184_26
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24291..25442)
DNA (1152bp) protein (384aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTA5_9CLOT
L3_072_000M1_scaffold_1184_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25439..26491)
DNA (1053bp) protein (351aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
3-dehydroquinate synthase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6E5_9FIRM
L3_072_000M1_scaffold_1184_28
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26515..27297)
DNA (783bp) protein (261aa)
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase AroF {ECO:0000313|EMBL:AFS78229.1}; EC=2.5.1.54 {ECO:0000313|EMBL:AFS78229.1};; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EGL5_CLOPA
Displaying 28 items

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