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L3_072_000M1_scaffold_1791

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1791_1
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..205
DNA (204bp) protein (68aa)
Putative ABC-type transport system, periplasmic component/surface lipoprotein n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WBZ6_DESOD
Membrane protein {ECO:0000313|EMBL:KJS12770.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
ABC-type transport system, periplasmic component/surface lipoprotein
L3_072_000M1_scaffold_1791_2
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

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290..1852
DNA (1563bp) protein (521aa)
ATPase component of uncharacterized ABC-type transporter n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KIU5_9FIRM
Heme ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJS12744.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
ATPase component of uncharacterized ABC-type transporter
L3_072_000M1_scaffold_1791_3
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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1830..2966
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI000367DF63
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP67468.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
ABC transporter permease
L3_072_000M1_scaffold_1791_4
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2959..3885
DNA (927bp) protein (309aa)
Branched chain amino acid abc transporter, permease protein n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TBU7_HELMI
branched chain amino acid abc transporter permease protein
Branched chain amino acid abc transporter, permease protein {ECO:0000313|EMBL:ABZ85220.1}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
L3_072_000M1_scaffold_1791_5
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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4664..5245
DNA (582bp) protein (194aa)
Membrane spanning protein n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LV12_TEPAE
Membrane spanning protein
Membrane spanning protein {ECO:0000313|EMBL:CCP26253.2}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
L3_072_000M1_scaffold_1791_6
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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5242..7047
DNA (1806bp) protein (602aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWZ3_9CLOT
L3_072_000M1_scaffold_1791_7
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7088..7933
DNA (846bp) protein (282aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DU91_DESRL
ATP-NAD/AcoX kinase
L3_072_000M1_scaffold_1791_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7946..8392
DNA (447bp) protein (149aa)
Arginine repressor n=1 Tax=Clostridium sp. CAG:226 RepID=R5B1C5_9CLOT
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
arginine repressor ArgR
L3_072_000M1_scaffold_1791_9
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

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8405..10141
DNA (1737bp) protein (579aa)
DNA repair protein RecN n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BTH6_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
DNA replication and repair protein RecN
L3_072_000M1_scaffold_1791_10
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10101..10766
DNA (666bp) protein (222aa)
TIGR02453 family protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LWC8_CLOCD
hypothetical protein
TIGR02453 family protein {ECO:0000313|EMBL:AEV69775.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_072_000M1_scaffold_1791_11
Thermoanaerobacter mathranii, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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10921..12162
DNA (1242bp) protein (414aa)
stage IV sporulation protein B (EC:3.4.21.116)
Stage IV sporulation protein B {ECO:0000313|EMBL:ADH60870.1}; EC=3.4.21.116 {ECO:0000313|EMBL:ADH60870.1};; Flags: Precursor;; TaxID=583358 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3).;"
Stage IV sporulation protein B n=1 Tax=Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3) RepID=D7ANV4_THEM3
L3_072_000M1_scaffold_1791_12
Coprococcus sp. CAG:131, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12331..13098
DNA (768bp) protein (256aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=2 Tax=Coprococcus RepID=D5HI74_9FIRM
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=1262862 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:131.;"
L3_072_000M1_scaffold_1791_13
unknown

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13137..13754
DNA (618bp) protein (206aa)

This feature has no annotations

L3_072_000M1_scaffold_1791_14
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

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13836..14972
DNA (1137bp) protein (379aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CK67_DESK7
L3_072_000M1_scaffold_1791_15
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14945..15793
DNA (849bp) protein (283aa)
punA; Purine nucleoside phosphorylase 1 (EC:2.4.2.1)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Purine nucleoside phosphorylase n=1 Tax=Clostridium intestinale URNW RepID=U2NGQ4_9CLOT
L3_072_000M1_scaffold_1791_16
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15840..16988
DNA (1149bp) protein (383aa)
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MM79_9FIRM
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:KJF28166.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
L3_072_000M1_scaffold_1791_17
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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17130..19463
DNA (2334bp) protein (778aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
peptidase n=1 Tax=Paenibacillus elgii RepID=UPI000248D0D7
hypothetical protein
L3_072_000M1_scaffold_1791_18
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19453..20088
DNA (636bp) protein (212aa)
Probable GTP-binding protein EngB n=1 Tax=Clostridium sp. CAG:349 RepID=R6WRN0_9CLOT
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
engB; ribosome biogenesis GTP-binding protein YsxC
L3_072_000M1_scaffold_1791_19
unknown

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20319..20498
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying 19 items

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