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L3_072_000M1_scaffold_614

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_614_1
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..398)
DNA (396bp) protein (132aa)
50S ribosomal protein L15 n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D4BE
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1444290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4570.;"
L3_072_000M1_scaffold_614_2
Brevibacillus agri, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(410..589)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=2 Tax=Brevibacillus RepID=J3AWC1_9BACL
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=1246477 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus agri BAB-2500.;"
rpmD; 50S ribosomal protein L30
L3_072_000M1_scaffold_614_3
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(607..1107)
DNA (501bp) protein (167aa)
30S ribosomal protein S5 n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2DG82_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
rpsE; 30S ribosomal protein S5
L3_072_000M1_scaffold_614_4
CG_Anaero_01, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


comp(1124..1369)
DNA (246bp) protein (82aa)
50S ribosomal protein L18 n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7KBN5_9FIRM
rplR; 50S ribosomal protein L18
Tax=CG_Anaero_01
L3_072_000M1_scaffold_614_5
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(1413..1913)
DNA (501bp) protein (167aa)
50S ribosomal protein L6 n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0K229_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
50S ribosomal protein L6
L3_072_000M1_scaffold_614_6
Thermoanaerobacter kivui, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1940..2338)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=2 Tax=Thermoanaerobacter RepID=D3T4P1_THEIA
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=2325 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter kivui (Acetogenium kivui).;"
L3_072_000M1_scaffold_614_7
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2567..3106)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RL5_ALKOO
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000255|HAMAP-Rule:MF_01333}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
L3_072_000M1_scaffold_614_8
RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated, Falkowbacteria, Parcubacteria, Bacteria

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comp(3130..3483)
DNA (354bp) protein (118aa)
50S ribosomal protein L24 n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RL24_CARHZ
rplX; 50S ribosomal protein L24
Tax=RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated
L3_072_000M1_scaffold_614_9
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3499..3867)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIZ1_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
50S ribosomal protein L14
L3_072_000M1_scaffold_614_10
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3896..4156)
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AHR5_9CLOT
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
rpsQ; 30S ribosomal protein S17
L3_072_000M1_scaffold_614_11
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4175..4372)
DNA (198bp) protein (66aa)
50S ribosomal protein L29 n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LBM1_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_072_000M1_scaffold_614_12
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4369..4809)
DNA (441bp) protein (147aa)
50S ribosomal protein L16 n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EN47_9FIRM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
50S ribosomal protein L16p (L10e)
L3_072_000M1_scaffold_614_13
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4809..5474)
DNA (666bp) protein (222aa)
30S ribosomal protein S3 n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NIL3_9FIRM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
rpsC; 30S ribosomal protein S3
L3_072_000M1_scaffold_614_14
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5487..5870)
DNA (384bp) protein (128aa)
50S ribosomal protein L22 n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A2Y0_MAHA5
50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_072_000M1_scaffold_614_15
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5885..6163)
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GH20_EUBLK
hypothetical protein
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_072_000M1_scaffold_614_16
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6200..7030)
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=1 Tax=Clostridium sp. CAG:138 RepID=R6AQE0_9CLOT
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
rplB; 50S ribosomal protein L2
L3_072_000M1_scaffold_614_17
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7049..7345)
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IG46_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
rplW; ribosomal protein L23
L3_072_000M1_scaffold_614_18
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7345..7971)
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CQR7_9CLOT
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
rplD; 50S ribosomal protein L4
L3_072_000M1_scaffold_614_19
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(7990..8622)
DNA (633bp) protein (211aa)
50S ribosomal protein L3 n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7KBM5_9FIRM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
ribosomal protein L3P
L3_072_000M1_scaffold_614_20
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

Not on your lists


comp(8642..8950)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Clostridium sp. CAG:349 RepID=R6WYP5_9CLOT
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
rpsJ; 30S ribosomal protein S10
L3_072_000M1_scaffold_614_21
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

9789..10079
DNA (291bp) protein (97aa)
Helix-turn-helix n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EP46_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CCX89806.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
L3_072_000M1_scaffold_614_22
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10858..13818)
DNA (2961bp) protein (987aa)
Spore coat protein CotH n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEB0_9FIRM
Spore coat protein CotH {ECO:0000313|EMBL:EEG78404.1}; Flags: Precursor;; TaxID=555088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
hypothetical protein
L3_072_000M1_scaffold_614_23
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13917..17387)
DNA (3471bp) protein (1157aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000255|HAMAP-Rule:MF_01451}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01451};; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01451};; ATP-dependent helicase/nuclease AddA {ECO:0000255|HAMAP-Rule:MF_01451}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
ATP-dependent helicase/nuclease subunit A n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=ADDA_ALKOO
recombination helicase AddA
L3_072_000M1_scaffold_614_24
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17371..20565)
DNA (3195bp) protein (1065aa)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044573}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044602};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044578};; ATP-dependent helicase/nuclease AddB {ECO:0000256|HAMAP-Rule:MF_01452}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AXV2_SYNWW
ATP-dependent nuclease subunit B
L3_072_000M1_scaffold_614_25
unknown

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20747..21427
DNA (681bp) protein (227aa)

This feature has no annotations

L3_072_000M1_scaffold_614_26
unknown

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21424..22077
DNA (654bp) protein (218aa)

This feature has no annotations

L3_072_000M1_scaffold_614_27
unknown

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22098..22556
DNA (459bp) protein (153aa)

This feature has no annotations

L3_072_000M1_scaffold_614_28
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22583..23986
DNA (1404bp) protein (468aa)
Peptidase, M20/M25/M40 family n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AA05_CARHZ
Dipeptidase PepV {ECO:0000313|EMBL:KFX34259.1}; TaxID=1422 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus (Bacillus stearothermophilus).;"
M20/M25/M40 family peptidase
L3_072_000M1_scaffold_614_29
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24004..25122
DNA (1119bp) protein (373aa)
Glycerate kinase {ECO:0000313|EMBL:EET62950.1}; EC=2.7.1.31 {ECO:0000313|EMBL:EET62950.1};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
glycerate kinase (EC:2.7.1.31)
Glycerate kinase n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6L9L0_9FIRM
L3_072_000M1_scaffold_614_30
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25306..29139
DNA (3834bp) protein (1278aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6T4Q1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC62776.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
hypothetical protein
Displaying items 1-30 of 42 in total

View Taxonomy