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L3_072_000M1_scaffold_3248

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_3248_1
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(274..1662)
DNA (1389bp) protein (463aa)
sulfide dehydrogenase (flavoprotein) subunit SudA (EC:1.97.-.- 1.4.1.13 1.4.1.14)
Glutamate synthase (NADPH), homotetrameric n=3 Tax=root RepID=B0MLR9_9FIRM
Glutamate synthase (NADPH) homotetrameric {ECO:0000313|EMBL:CDC48794.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_3248_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1681..2553)
DNA (873bp) protein (291aa)
Ferredoxin--NADP+ reductase, subunit alpha {ECO:0000313|EMBL:EDS01419.1}; EC=1.18.1.2 {ECO:0000313|EMBL:EDS01419.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.18.1.2 1.97.-.-)
Ferredoxin--NADP+ reductase, subunit alpha n=2 Tax=Eubacterium RepID=B0MLS0_9FIRM
L3_072_000M1_scaffold_3248_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2867..3982
DNA (1116bp) protein (372aa)
Uncharacterized protein n=2 Tax=root RepID=B0MLS2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01421.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_3248_4

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4208..5113
DNA (906bp) protein (302aa)
Transcriptional regulator n=1 Tax=human gut metagenome RepID=K1TNE5_9ZZZZ
Transcriptional regulator {ECO:0000313|EMBL:EKC74677.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted transcriptional regulators
L3_072_000M1_scaffold_3248_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5221..6705
DNA (1485bp) protein (495aa)
Peptidase, M20/M25/M40 family {ECO:0000313|EMBL:EDS01423.1}; EC=3.4.-.- {ECO:0000313|EMBL:EDS01423.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Peptidase, M20/M25/M40 family n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLS4_9FIRM
hypothetical protein
L3_072_000M1_scaffold_3248_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7241..8320
DNA (1080bp) protein (360aa)
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000313|EMBL:CBL33424.1}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000313|EMBL:CBL33424.1};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Phosphoserine aminotransferase n=2 Tax=Eubacterium siraeum RepID=D4MI41_9FIRM
L3_072_000M1_scaffold_3248_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8353..9516
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
Phosphoglycerate dehydrogenase and related dehydrogenases {ECO:0000313|EMBL:CBK97078.1}; EC=1.1.1.95 {ECO:0000313|EMBL:CBK97078.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Phosphoglycerate dehydrogenase and related dehydrogenases n=2 Tax=Eubacterium RepID=D4JVF9_9FIRM
L3_072_000M1_scaffold_3248_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10502..10813
DNA (312bp) protein (104aa)
Transcriptional regulator, PadR family n=3 Tax=root RepID=D4MI39_9FIRM
transcriptional regulator, PadR family
Transcriptional regulator, PadR family {ECO:0000313|EMBL:CBL33422.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_3248_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10830..11456
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01062.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted membrane protein
L3_072_000M1_scaffold_3248_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11456..12445
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01063.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_3248_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12598..13008
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01064.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_3248_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13030..13491
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6S1G8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC49176.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_3248_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13760..14053
DNA (294bp) protein (98aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=B0MMI3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33419.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_3248_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14299..14679
DNA (381bp) protein (127aa)
Putative dihydroxyacetone kinase regulator n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMI4_9FIRM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBL33418.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_3248_15
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14945..15439
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BJ22_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71813.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
L3_072_000M1_scaffold_3248_16
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15490..16044
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BJ22_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71813.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
L3_072_000M1_scaffold_3248_17
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16073..16504
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z4R7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM51967.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
hypothetical protein
L3_072_000M1_scaffold_3248_18
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16526..17224
DNA (699bp) protein (233aa)
Tetratricopeptide TPR_1 repeat-containing protein n=6 Tax=Clostridium thermocellum RepID=A3DGW2_CLOTH
hypothetical protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:ABN53191.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_072_000M1_scaffold_3248_19
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17244..17738
DNA (495bp) protein (165aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=N9Z1S2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ51015.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
L3_072_000M1_scaffold_3248_20
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17782..17985
DNA (204bp) protein (68aa)
Putative dihydroxyacetone kinase regulator n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMI4_9FIRM
transcriptional regulator
Putative dihydroxyacetone kinase regulator {ECO:0000313|EMBL:CDC49178.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_3248_21
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18243..20036
DNA (1794bp) protein (598aa)
Myosin-crossreactive antigen n=2 Tax=Eubacterium RepID=D4JVF2_9FIRM
Myosin-crossreactive antigen {ECO:0000313|EMBL:CDC49179.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Myosin-crossreactive antigen
L3_072_000M1_scaffold_3248_22
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20192..21424)
DNA (1233bp) protein (411aa)
DNA polymerase beta domain-containing protein region n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RNA2_9FIRM
DNA polymerase beta domain-containing protein region {ECO:0000313|EMBL:CDC49180.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_072_000M1_scaffold_3248_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21826..22074)
DNA (249bp) protein (83aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=R6RJV7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33416.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_3248_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22093..22611)
DNA (519bp) protein (173aa)
Helix-turn-helix n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MI32_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL33415.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_3248_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22942..23559
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01103.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_3248_26
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23635..24318
DNA (684bp) protein (228aa)
Nodulation efficiency protein D n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RV17_9FIRM
Nodulation efficiency protein D {ECO:0000313|EMBL:CDC49189.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
NfeD-like.
L3_072_000M1_scaffold_3248_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24357..25742
DNA (1386bp) protein (462aa)
Uncharacterized protein conserved in bacteria n=3 Tax=root RepID=D4MI29_9FIRM
hypothetical protein
SPFH/Band 7/PHB domain protein {ECO:0000313|EMBL:EDS01105.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_072_000M1_scaffold_3248_28
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26306..28972
DNA (2667bp) protein (889aa)
Fibronectin type III domain n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MNF8_9FIRM
Fibronectin type III domain.
Fibronectin type III domain {ECO:0000313|EMBL:CDC43506.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_3248_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29037..30773
DNA (1737bp) protein (579aa)
Fibronectin type III domain n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MNF9_9FIRM
Fibronectin type III domain.
Fibronectin type III domain {ECO:0000313|EMBL:CBL35292.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Displaying 29 items

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