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L3_072_000M1_scaffold_1050

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1050_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(316..1395)
DNA (1080bp) protein (360aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Eubacterium RepID=B0MKE4_9FIRM
L3_072_000M1_scaffold_1050_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1466..3508)
DNA (2043bp) protein (681aa)
methionyl-tRNA synthetase (EC:6.1.1.10)
Putative methionine--tRNA ligase n=3 Tax=root RepID=B0MKE5_9FIRM
Putative methionine--tRNA ligase {ECO:0000313|EMBL:EDS01838.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_072_000M1_scaffold_1050_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3826..5790
DNA (1965bp) protein (655aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKC5_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EDS01840.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
diguanylate cyclase (GGDEF) domain
L3_072_000M1_scaffold_1050_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6006..6776
DNA (771bp) protein (257aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MKC6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01841.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Glycosyl transferase family 2.
L3_072_000M1_scaffold_1050_5
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6776..7798
DNA (1023bp) protein (341aa)
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RHT8_9FIRM
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:CDC47360.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Glycosyltransferases involved in cell wall biogenesis
L3_072_000M1_scaffold_1050_6
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7810..8610
DNA (801bp) protein (267aa)
ABC-type polysaccharide/polyol phosphate export systems, permease component n=3 Tax=Eubacterium RepID=D4MHX1_9FIRM
ABC-type polysaccharide/polyol phosphate export systems, permease component
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_1050_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8624..9364
DNA (741bp) protein (247aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKC9_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS01844.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
L3_072_000M1_scaffold_1050_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9736..10767
DNA (1032bp) protein (344aa)
LICD family protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKD1_9FIRM
LICD family protein {ECO:0000313|EMBL:EDS01845.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
LPS biosynthesis protein
L3_072_000M1_scaffold_1050_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10724..11197
DNA (474bp) protein (158aa)
Glycerol-3-phosphate cytidylyltransferase {ECO:0000313|EMBL:EDS01847.1}; EC=2.7.7.39 {ECO:0000313|EMBL:EDS01847.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Glycerol-3-phosphate cytidylyltransferase (EC:2.7.7.39)
Glycerol-3-phosphate cytidylyltransferase n=3 Tax=root RepID=D4MHX3_9FIRM
L3_072_000M1_scaffold_1050_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11243..13669
DNA (2427bp) protein (809aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EDS01848.1}; EC=2.4.-.- {ECO:0000313|EMBL:EDS01848.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Glycosyltransferase, group 1 family protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKD3_9FIRM
Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
L3_072_000M1_scaffold_1050_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13731..14354)
DNA (624bp) protein (208aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=root RepID=D4JV94_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBK97013.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1050_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15097..15381
DNA (285bp) protein (95aa)
10 kDa chaperonin n=2 Tax=Eubacterium RepID=B0MKD5_9FIRM
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Co-chaperonin GroES (HSP10)
L3_072_000M1_scaffold_1050_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15404..17041
DNA (1638bp) protein (546aa)
60 kDa chaperonin n=3 Tax=Bacteria RepID=D4JV95_9FIRM
chaperonin GroL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1050_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17132..18181)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Eubacterium siraeum RepID=UPI0002F64277
Uncharacterized protein {ECO:0000313|EMBL:CDC47434.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_072_000M1_scaffold_1050_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18329..19816
DNA (1488bp) protein (496aa)
Glycosyl hydrolase family 43 n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SLJ5_9FIRM
Beta-xylosidase
Glycosyl hydrolase family 43 {ECO:0000313|EMBL:CDC47437.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_1050_16
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19833..21134
DNA (1302bp) protein (434aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
phenylacetate-CoA ligase (EC:6.2.1.30)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MKI6_9FIRM
L3_072_000M1_scaffold_1050_17
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21136..21549
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SLK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC47442.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_072_000M1_scaffold_1050_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21583..22053
DNA (471bp) protein (157aa)
Uncharacterized conserved protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVA0_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBK97019.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1050_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22725..23579)
DNA (855bp) protein (285aa)
Predicted membrane protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVA1_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBK97020.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1050_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23586..24440)
DNA (855bp) protein (285aa)
AraC-type DNA-binding domain-containing proteins n=3 Tax=root RepID=D4MHY6_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBL33369.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1050_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24786..27287
DNA (2502bp) protein (834aa)
cellobiose phosphorylase (EC:2.4.1.20)
Glycosyltransferase family 36 n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKI1_9FIRM
Glycosyltransferase family 36 {ECO:0000313|EMBL:EDS01796.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_072_000M1_scaffold_1050_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27406..27573
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MKI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01795.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1050_23
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27634..27960
DNA (327bp) protein (109aa)
Predicted transcriptional regulators n=3 Tax=Eubacterium RepID=D4MHZ0_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CDC49625.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_1050_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28021..29244)
DNA (1224bp) protein (408aa)
ATPase n=1 Tax=Eubacterium siraeum RepID=UPI00030BE25D
Uncharacterized protein {ECO:0000313|EMBL:EDS01793.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted ATPase (AAA+ superfamily)
L3_072_000M1_scaffold_1050_25
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29769..30395
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6S2T2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC49621.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L3_072_000M1_scaffold_1050_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30392..32560
DNA (2169bp) protein (723aa)
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MHZ1_9FIRM
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain {ECO:0000313|EMBL:CBL33374.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1050_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33073..33993)
DNA (921bp) protein (307aa)
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Dihydroorotate dehydrogenase n=2 Tax=Eubacterium siraeum RepID=D4MHZ2_9FIRM
L3_072_000M1_scaffold_1050_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33990..34763)
DNA (774bp) protein (258aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKK4_9FIRM
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L3_072_000M1_scaffold_1050_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34852..35466)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01785.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_072_000M1_scaffold_1050_30
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35479..38685)
DNA (3207bp) protein (1069aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=4 Tax=root RepID=B0MKK2_9FIRM
Displaying items 1-30 of 56 in total

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