ggKbase home page

L3_072_000M1_scaffold_1607

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1607_1
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(221..526)
DNA (306bp) protein (102aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=B0MRX4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC48779.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_1607_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(740..1000)
DNA (261bp) protein (87aa)
Uncharacterized protein n=3 Tax=Eubacterium siraeum RepID=B0MRX3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34287.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1607_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1128..1991
DNA (864bp) protein (288aa)
Pyridoxal/pyridoxine/pyridoxamine kinase (EC:2.7.1.35)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591, ECO:0000313|EMBL:CBK95933.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Pyridoxal/pyridoxine/pyridoxamine kinase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS64_9FIRM
L3_072_000M1_scaffold_1607_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2525..3148)
DNA (624bp) protein (208aa)
GDSL-like protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRX0_9FIRM
GDSL-like protein {ECO:0000313|EMBL:EDR99538.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Lysophospholipase L1 and related esterases
L3_072_000M1_scaffold_1607_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3354..4481)
DNA (1128bp) protein (376aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKK2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34285.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1607_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5300..5773
DNA (474bp) protein (158aa)
Uncharacterized conserved protein n=2 Tax=Eubacterium siraeum RepID=D4JS62_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL34283.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1607_7
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5845..8817)
DNA (2973bp) protein (991aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R9E5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44495.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_072_000M1_scaffold_1607_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9261..9668
DNA (408bp) protein (136aa)
Transcriptional regulator, TetR family n=2 Tax=Eubacterium siraeum RepID=B0MRU0_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDR99508.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
TetR family transcriptional regulator
L3_072_000M1_scaffold_1607_9
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9768..10424)
DNA (657bp) protein (219aa)
Predicted amidophosphoribosyltransferases n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RGL1_9FIRM
Predicted amidophosphoribosyltransferases {ECO:0000313|EMBL:CDC44489.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Predicted amidophosphoribosyltransferases
L3_072_000M1_scaffold_1607_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10411..12606)
DNA (2196bp) protein (732aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKJ3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34276.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1607_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12633..13394)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR99501.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1607_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13363..13524)
DNA (162bp) protein (54aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS57_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95926.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1607_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13576..14619)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Eubacterium siraeum RepID=UPI0002E35504
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDR99500.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
transcriptional regulator
L3_072_000M1_scaffold_1607_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14730..14843
DNA (114bp) protein (38aa)
Uncharacterized protein n=2 Tax=Eubacterium siraeum RepID=B0MRT1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34272.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1607_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14836..16398
DNA (1563bp) protein (521aa)
Site-specific recombinases DNA invertase Pin homologs n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RN60_9FIRM
Site-specific recombinases DNA invertase Pin homologs {ECO:0000313|EMBL:CDC44481.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_072_000M1_scaffold_1607_16
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16395..16742
DNA (348bp) protein (116aa)
Mn-containing catalase n=4 Tax=Eubacterium RepID=D4JS54_9FIRM
Mn-containing catalase
Mn-containing catalase {ECO:0000313|EMBL:CDC44479.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_1607_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17246..17710)
DNA (465bp) protein (155aa)
SsrA-binding protein n=3 Tax=Eubacterium RepID=D4JS53_9FIRM
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L3_072_000M1_scaffold_1607_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17904..18128
DNA (225bp) protein (75aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=R6RII3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34268.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1607_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18155..19507
DNA (1353bp) protein (451aa)
glutamate dehydrogenase (NADP) (EC:1.4.1.4)
Glutamate dehydrogenase n=2 Tax=Eubacterium siraeum RepID=D4MKI4_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1607_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19552..19716
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR99494.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1607_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20285..22969)
DNA (2685bp) protein (895aa)
Beta-galactosidase/beta-glucuronidase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKI2_9FIRM
Beta-galactosidase/beta-glucuronidase {ECO:0000313|EMBL:CBL34265.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Beta-galactosidase/beta-glucuronidase
L3_072_000M1_scaffold_1607_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23221..24828)
DNA (1608bp) protein (536aa)
Bacterial group 2 Ig-like protein n=2 Tax=root RepID=B0MRS3_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EDR99491.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Bacterial surface proteins containing Ig-like domains
L3_072_000M1_scaffold_1607_23
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25314..25592
DNA (279bp) protein (93aa)
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Eubacterium sp. CAG:786 PF6_9FIRM">RepID=R5GPF6_9FIRM
4-diphosphocytidyl-2C-methyl-D-erythritol kinase {ECO:0000313|EMBL:CCY17584.1}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
type IV pilus retraction protein PilT
L3_072_000M1_scaffold_1607_24
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25810..27804
DNA (1995bp) protein (665aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CC97_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDD74943.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Methyl-accepting chemotaxis protein
L3_072_000M1_scaffold_1607_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28047..29885
DNA (1839bp) protein (613aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897, ECO:0000313|EMBL:CBK95916.1}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897, ECO:0000313|EMBL:CBK95916.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS47_9FIRM
L3_072_000M1_scaffold_1607_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29939..31072)
DNA (1134bp) protein (378aa)
Putative cysteine desulfurase family protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRS1_9FIRM
Putative cysteine desulfurase family protein {ECO:0000313|EMBL:EDR99489.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Selenocysteine lyase
L3_072_000M1_scaffold_1607_27
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31069..31284)
DNA (216bp) protein (72aa)
Uncharacterized protein n=4 Tax=Eubacterium RepID=B0MRS0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC43625.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_1607_28
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32000..34135
DNA (2136bp) protein (712aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SAH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43627.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_072_000M1_scaffold_1607_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34165..36177
DNA (2013bp) protein (671aa)
DHHA1 domain protein n=3 Tax=root RepID=B0MRR6_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:EDR99484.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L3_072_000M1_scaffold_1607_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


36195..36641
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=4 Tax=root RepID=D4JS43_9FIRM
LSU ribosomal protein L9P
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Displaying items 1-30 of 34 in total

View Taxonomy