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L3_072_000M1_scaffold_1942

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1942_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..3427
DNA (3426bp) protein (1142aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00776.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1942_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3588..5201
DNA (1614bp) protein (538aa)
ATPase components of ABC transporters with duplicated ATPase domains n=4 Tax=root RepID=D4JQR0_9FIRM
ATPase components of ABC transporters with duplicated ATPase domains
ATPase components of ABC transporters with duplicated ATPase domains {ECO:0000313|EMBL:CBK95429.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1942_3
unknown

Not on your lists

5338..5829
DNA (492bp) protein (164aa)

This feature has no annotations

L3_072_000M1_scaffold_1942_4
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5865..6290)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R8Z8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44335.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_072_000M1_scaffold_1942_5
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6308..6763)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RG73_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC44334.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_1942_6
unknown

Not on your lists

comp(6860..7042)
DNA (183bp) protein (61aa)

This feature has no annotations

L3_072_000M1_scaffold_1942_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7039..8223)
DNA (1185bp) protein (395aa)
Bacterial transcriptional activator domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN55_9FIRM
Bacterial transcriptional activator domain protein {ECO:0000313|EMBL:EDS00778.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Transcriptional regulatory protein, C terminal./Bacterial transcriptional activator domain.
L3_072_000M1_scaffold_1942_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8745..9812)
DNA (1068bp) protein (356aa)
Twitching motility protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN56_9FIRM
Twitching motility protein {ECO:0000313|EMBL:EDS00779.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
pilus retraction protein PilT
L3_072_000M1_scaffold_1942_9
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9841..10323)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RLJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43906.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_072_000M1_scaffold_1942_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10320..10670)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JQR3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95432.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1942_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10667..11170)
DNA (504bp) protein (168aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MN59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00782.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1942_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11199..11522)
DNA (324bp) protein (108aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MN60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43914.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_072_000M1_scaffold_1942_13
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11536..12573)
DNA (1038bp) protein (346aa)
Bacterial type II secretion system domain protein F n=2 Tax=Eubacterium RepID=B0MN61_9FIRM
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:CDC43917.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Type II secretory pathway, component PulF
L3_072_000M1_scaffold_1942_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12602..13777)
DNA (1176bp) protein (392aa)
Transglutaminase-like protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN62_9FIRM
Transglutaminase-like protein {ECO:0000313|EMBL:EDS00785.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Transglutaminase-like enzymes, putative cysteine proteases
L3_072_000M1_scaffold_1942_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13937..14356)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00786.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1942_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14353..15411)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MN64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00788.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1942_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15767..16630)
DNA (864bp) protein (288aa)
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MIG8_9FIRM
L3_072_000M1_scaffold_1942_18
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16627..18024)
DNA (1398bp) protein (466aa)
DNA repair protein radA n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JQR9_9FIRM
DNA repair protein RadA
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_1942_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18046..18864)
DNA (819bp) protein (273aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EDS00791.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EDS00791.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN70_9FIRM
L3_072_000M1_scaffold_1942_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19912..21345
DNA (1434bp) protein (478aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JQS2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95441.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1942_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21486..22406
DNA (921bp) protein (307aa)
ABC-type sugar transport systems, permease components n=2 Tax=Eubacterium siraeum RepID=D4MIG4_9FIRM
ABC-type sugar transport systems, permease components
ABC-type sugar transport systems, permease components {ECO:0000313|EMBL:CBL33547.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1942_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22415..23323
DNA (909bp) protein (303aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=2 Tax=Eubacterium siraeum RepID=D4MIG3_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL33546.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1942_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23479..23754)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Eubacterium siraeum RepID=B0MN82_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33545.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_1942_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23885..26413)
DNA (2529bp) protein (843aa)
ATPase components of various ABC-type transport systems, contain duplicated ATPase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JQS6_9FIRM
ATPase components of various ABC-type transport systems, contain duplicated ATPase {ECO:0000313|EMBL:CBK95445.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L3_072_000M1_scaffold_1942_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26400..27272)
DNA (873bp) protein (291aa)
Cobalt transport protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JQS7_9FIRM
Cobalt transport protein.
Cobalt transport protein {ECO:0000313|EMBL:CBK95446.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1942_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27288..28142)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00800.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1942_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28238..32539)
DNA (4302bp) protein (1434aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00801.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1942_28
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32576..32833)
DNA (258bp) protein (86aa)
Uncharacterized protein n=4 Tax=root RepID=B0MN87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44225.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_1942_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(33262..34638)
DNA (1377bp) protein (459aa)
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Glycine--tRNA ligase n=3 Tax=root RepID=D4JQT0_9FIRM
L3_072_000M1_scaffold_1942_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34790..35905)
DNA (1116bp) protein (372aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=3 Tax=root RepID=B0MN89_9FIRM
Displaying items 1-30 of 42 in total

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