ggKbase home page

L3_072_000M1_scaffold_150

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_150_1
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

Not on your lists

488..2038
DNA (1551bp) protein (517aa)
Mg chelatase subunit ChlI n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BU84_9FIRM
Mg chelatase subunit ChlI {ECO:0000313|EMBL:CDD69341.1}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
Mg chelatase-like protein
L3_072_000M1_scaffold_150_2
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2057..3127
DNA (1071bp) protein (357aa)
Transcriptional regulator TrmB n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FUA8_9PROT
Transcriptional regulator TrmB {ECO:0000313|EMBL:CDE18430.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
DNA protecting protein DprA
L3_072_000M1_scaffold_150_3
Corallococcus sp. CAG:1435, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3165..5504
DNA (2340bp) protein (780aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1262867 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; environmental samples.;" source="Corallococcus sp. CAG:1435.;"
DNA topoisomerase 1 n=1 Tax=Corallococcus sp. CAG:1435 RepID=R5VVZ5_9DELT
topoisomerase
L3_072_000M1_scaffold_150_4
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5512..6846
DNA (1335bp) protein (445aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXH2_9CLOT
tRNA:m(5)U-54 methyltransferase
L3_072_000M1_scaffold_150_5
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6875..7513
DNA (639bp) protein (213aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
ATP-dependent protease subunit HslV n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FWY3_9PROT
20S proteasome subunits A and B
L3_072_000M1_scaffold_150_6
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7514..8824
DNA (1311bp) protein (437aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FY08_9PROT
ATP-dependent protease ATPase subunit HslU {ECO:0000256|SAAS:SAAS00089650}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
heat shock protein hslvu, atpase subunit hslu
L3_072_000M1_scaffold_150_7
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8888..10138
DNA (1251bp) protein (417aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hisS1; histidyl-tRNA synthetase HisS (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FXJ0_9PROT
L3_072_000M1_scaffold_150_8
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10179..10490
DNA (312bp) protein (104aa)
LBCA THIOREDOXIN n=1 Tax=synthetic construct RepID=UPI00038A5F74
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
thioredoxin
L3_072_000M1_scaffold_150_9
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10665..12527)
DNA (1863bp) protein (621aa)
ABC-type transport system permease component n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G2K5_9PROT
ABC-type transport system permease component {ECO:0000313|EMBL:CDE20988.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
ABC transporter permease
L3_072_000M1_scaffold_150_10
Firmicutes bacterium CAG:449, Firmicutes, Bacteria

Not on your lists

comp(12521..13222)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:449 RepID=R6RSI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46021.1}; TaxID=1263023 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:449.;"
ABC transporter
L3_072_000M1_scaffold_150_11
unknown

Not on your lists

comp(13360..13701)
DNA (342bp) protein (114aa)

This feature has no annotations

L3_072_000M1_scaffold_150_12
Clostridium sp. CAG:288, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13705..14940)
DNA (1236bp) protein (412aa)
Oligopeptide/dipeptide ABC transporter ATPase subunit n=1 Tax=Clostridium sp. CAG:288 RepID=R7FLA4_9CLOT
Oligopeptide/dipeptide ABC transporter ATPase subunit {ECO:0000313|EMBL:CDE15640.1}; TaxID=1262791 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:288.;"
oligopeptide/dipeptide ABC transporter ATPase
L3_072_000M1_scaffold_150_13
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14942..16321)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FUS2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE19044.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
ABC transporter ATPase subunit
L3_072_000M1_scaffold_150_14
Firmicutes bacterium CAG:313, Tenericutes, Bacteria

Not on your lists

comp(16324..17478)
DNA (1155bp) protein (385aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Firmicutes bacterium CAG:313 RepID=R6Y0X5_9FIRM
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDD22246.1}; TaxID=1263017 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:313.;"
binding-protein-dependent transport system inner membrane protein
L3_072_000M1_scaffold_150_15
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17491..18477)
DNA (987bp) protein (329aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K803_9FIRM
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDE71878.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
binding-protein-dependent transport system inner membrane protein
L3_072_000M1_scaffold_150_16
Firmicutes bacterium CAG:345, Firmicutes, Bacteria

Not on your lists

comp(18614..21205)
DNA (2592bp) protein (864aa)
Extracellular solute-binding protein family 5 n=1 Tax=Firmicutes bacterium CAG:345 RepID=R6XLQ0_9FIRM
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:CDD22535.1}; TaxID=1263020 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:345.;"
extracellular solute-binding protein
L3_072_000M1_scaffold_150_17
unknown

Not on your lists

comp(21253..22992)
DNA (1740bp) protein (580aa)

This feature has no annotations

L3_072_000M1_scaffold_150_18
Clostridium sp. CAG:307, Tenericutes, Bacteria

Not on your lists

comp(23054..30448)
DNA (7395bp) protein (2465aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Clostridium sp. CAG:307 RepID=R7GF54_9CLOT
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:CDE24582.1}; TaxID=1262795 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:307.;"
peptidase S8 and S53 subtilisin kexin sedolisin
L3_072_000M1_scaffold_150_19
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30802..35910)
DNA (5109bp) protein (1703aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K3X5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE70934.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
L3_072_000M1_scaffold_150_20
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36173..39040)
DNA (2868bp) protein (956aa)
Ig-like domain-containing surface protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K3R5_9FIRM
Ig-like domain-containing surface protein {ECO:0000313|EMBL:CDE70935.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
Ig-like domain-containing surface protein
L3_072_000M1_scaffold_150_21
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39111..42029)
DNA (2919bp) protein (973aa)
von Willebrand factor type A n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4X3_9FIRM
von Willebrand factor type A {ECO:0000313|EMBL:CDE70936.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
von Willebrand factor type A domain protein
L3_072_000M1_scaffold_150_22
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42042..44036)
DNA (1995bp) protein (665aa)
von Willebrand factor type A n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K7C4_9FIRM
von Willebrand factor type A {ECO:0000313|EMBL:CDE70937.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
hypothetical protein
L3_072_000M1_scaffold_150_23
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44033..44932)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K546_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE71006.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
hypothetical protein
L3_072_000M1_scaffold_150_24
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45014..46009)
DNA (996bp) protein (332aa)
ATPase associated with various cellular activities AAA_3 n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G0T1_9PROT
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:CDE20541.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
nirQ; Denitrification regulatory protein NirQ
L3_072_000M1_scaffold_150_25
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(46158..47396)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K470_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE70648.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
hypothetical protein
L3_072_000M1_scaffold_150_26
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(47836..57543)
DNA (9708bp) protein (3236aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GZ06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26446.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
cell surface protein
L3_072_000M1_scaffold_150_27
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58033..59058)
DNA (1026bp) protein (342aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H0V9_9FIRM
dTDP-glucose 4,6-dehydratase
L3_072_000M1_scaffold_150_28
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(59055..59627)
DNA (573bp) protein (191aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3 5-epimerase n=1 Tax=Eubacterium sp. CAG:156 RepID=R5YQ84_9FIRM
dTDP-4-dehydrorhamnose 3 5-epimerase {ECO:0000313|EMBL:CDA29593.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
L3_072_000M1_scaffold_150_29
Bacillus bataviensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(59614..61056)
DNA (1443bp) protein (481aa)
Polysaccharide transporter n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6DSJ8_9BACI
Polysaccharide transporter {ECO:0000313|EMBL:EKN71334.1}; TaxID=1117379 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus bataviensis LMG 21833.;"
heteropolysaccharide repeat-containing protein
L3_072_000M1_scaffold_150_30
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61058..61924)
DNA (867bp) protein (289aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:CBL16377.1}; EC=1.1.1.133 {ECO:0000313|EMBL:CBL16377.1};; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
dTDP-4-dehydrorhamnose reductase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4L9T2_RUMC1
Displaying items 1-30 of 48 in total

View Taxonomy