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L3_072_000M1_scaffold_736

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_736_1
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

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210..1061
DNA (852bp) protein (284aa)
Transcriptional regulator LacI family n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZZU9_9FIRM
Transcriptional regulator LacI family {ECO:0000313|EMBL:CDD46556.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
putative lacI family transcriptional regulator
L3_072_000M1_scaffold_736_2
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1333..2364
DNA (1032bp) protein (344aa)
Hypothetical membrane-anchored protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FY35_9PROT
Hypothetical membrane-anchored protein {ECO:0000313|EMBL:CDE19591.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
conserved hypothetical protein (UPF0283)
L3_072_000M1_scaffold_736_3
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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2844..4940
DNA (2097bp) protein (699aa)
Glutamine synthetase catalytic region n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LNJ1_TREBD
glutamine synthetase catalytic subunit
Glutamine synthetase catalytic region {ECO:0000313|EMBL:AEE15845.1}; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L3_072_000M1_scaffold_736_4
Pristionchus pacificus, Pristionchus, Diplogasterida, Chromadorea, Nematoda, Metazoa

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5538..6560
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Pristionchus pacificus RepID=H3E126_PRIPA
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:PPA03387}; TaxID=54126 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Diplogasterida; Neodiplogasteridae; Pristionchus.;" source="Pristionchus pacificus (Parasitic nematode).;"
tolA; cell envelope integrity inner membrane protein TolA
L3_072_000M1_scaffold_736_5
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6648..8744)
DNA (2097bp) protein (699aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FXR9_9PROT
L3_072_000M1_scaffold_736_6
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9271..9525)
DNA (255bp) protein (85aa)
30S ribosomal protein S15 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AD95_9CLOT
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
ribosomal protein S15
L3_072_000M1_scaffold_736_7
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9756..11126)
DNA (1371bp) protein (457aa)
hemZ; oxygen-independent coproporphyrinogen-III oxidase 2 (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FW15_9PROT
Coproporphyrinogen dehydrogenase {ECO:0000313|EMBL:CDE19479.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_736_8
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11265..13445)
DNA (2181bp) protein (727aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I SpoT/RelA n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FX62_9PROT
(P)ppGpp synthetase I SpoT/RelA {ECO:0000313|EMBL:CDE19475.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_736_9
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13483..15855)
DNA (2373bp) protein (791aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FW04_9PROT
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:CDE19469.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
RecJ; single-stranded DNA-specific exonuclease
L3_072_000M1_scaffold_736_10
unknown

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comp(15967..17025)
DNA (1059bp) protein (353aa)

This feature has no annotations

L3_072_000M1_scaffold_736_11
unknown

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comp(17018..18514)
DNA (1497bp) protein (499aa)

This feature has no annotations

L3_072_000M1_scaffold_736_12
unknown

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comp(19129..19506)
DNA (378bp) protein (126aa)

This feature has no annotations

L3_072_000M1_scaffold_736_13
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20120..20572)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G0G4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE19462.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
preprotein translocase subunit YajC
L3_072_000M1_scaffold_736_14
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20760..21443)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7II54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE50242.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_072_000M1_scaffold_736_15
unknown

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21580..22464
DNA (885bp) protein (295aa)

This feature has no annotations

L3_072_000M1_scaffold_736_16
unknown

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comp(22831..23826)
DNA (996bp) protein (332aa)

This feature has no annotations

L3_072_000M1_scaffold_736_17
unknown

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comp(24019..24870)
DNA (852bp) protein (284aa)

This feature has no annotations

L3_072_000M1_scaffold_736_18
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25227..26117)
DNA (891bp) protein (297aa)
Radical SAM domain protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G2P5_9PROT
Radical SAM domain protein {ECO:0000313|EMBL:CDE20247.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hypothetical protein
L3_072_000M1_scaffold_736_19
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26139..26978)
DNA (840bp) protein (280aa)
Hydrolase TatD family n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FYG5_9PROT
Hydrolase TatD family {ECO:0000313|EMBL:CDE20249.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
TatD family hydrolase
L3_072_000M1_scaffold_736_20
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27072..29096)
DNA (2025bp) protein (675aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
Methionine--tRNA ligase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SZ65_ROSHA
methionyl-tRNA synthetase
L3_072_000M1_scaffold_736_21
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

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29243..29863
DNA (621bp) protein (207aa)
Nucleoside recognition domain protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FZF7_9PROT
Spore maturation protein A {ECO:0000313|EMBL:CDD69455.1}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
spore maturation protein A
L3_072_000M1_scaffold_736_22
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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29860..30372
DNA (513bp) protein (171aa)
Spore maturation protein B (Gene spmB) n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G031_9PROT
Spore maturation protein B (Gene spmB) {ECO:0000313|EMBL:CDE20261.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hypothetical protein
L3_072_000M1_scaffold_736_23
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30492..31301)
DNA (810bp) protein (270aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
corrin/porphyrin methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G7H5_9PROT
L3_072_000M1_scaffold_736_24
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(31324..32073)
DNA (750bp) protein (250aa)
tRNA1(Val) (adenine(37)-N6)-methyltransferase (EC:2.1.1.223)
Staphylococcus haemolyticus JCSC1435 DNA complete genome n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G5D2_9PROT
Staphylococcus haemolyticus JCSC1435 DNA complete genome {ECO:0000313|EMBL:CDE21958.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_736_25
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32140..32310)
DNA (171bp) protein (57aa)
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (Chain I) n=1 Tax=Clostridium sp. CAG:349 RepID=R6WU29_9CLOT
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (Chain I) {ECO:0000313|EMBL:CDD10439.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L3_072_000M1_scaffold_736_26
Corallococcus sp. CAG:1435, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(32502..33662)
DNA (1161bp) protein (387aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=Corallococcus sp. CAG:1435 RepID=R5WQ13_9DELT
Cysteine desulfurase {ECO:0000313|EMBL:CCZ94597.1}; TaxID=1262867 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; environmental samples.;" source="Corallococcus sp. CAG:1435.;"
L3_072_000M1_scaffold_736_27
unknown

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34030..34542
DNA (513bp) protein (171aa)

This feature has no annotations

L3_072_000M1_scaffold_736_28
Slackia sp. CM382, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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34657..35166
DNA (510bp) protein (170aa)
PAP2 family protein n=1 Tax=Slackia sp. CM382 RepID=J6IVM7_9ACTN
PAP2 superfamily protein
PAP2 family protein {ECO:0000313|EMBL:EJU34993.1}; TaxID=1111137 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia sp. CM382.;"
L3_072_000M1_scaffold_736_29
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(35313..36146)
DNA (834bp) protein (278aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
rsmA; ribosomal RNA small subunit methyltransferase A (EC:2.1.1.182)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Clostridium sp. CAG:349 RepID=R6XTZ9_9CLOT
L3_072_000M1_scaffold_736_30
Eubacterium brachy, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(36161..36508)
DNA (348bp) protein (116aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; TaxID=1321814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium brachy ATCC 33089.;"
phosphatidylserine decarboxylase precursor (EC:4.1.1.65)
Phosphatidylserine decarboxylase n=1 Tax=Eubacterium brachy ATCC 33089 RepID=V1CQF2_9FIRM
Displaying 30 items

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