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L3_072_000M1_scaffold_2748

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_2748_1
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(276..1328)
DNA (1053bp) protein (351aa)
Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945};; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
L-threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Clostridium sp. CAG:768 RepID=R7HUM1_9CLOT
L3_072_000M1_scaffold_2748_2
unknown

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comp(1345..1755)
DNA (411bp) protein (137aa)

This feature has no annotations

L3_072_000M1_scaffold_2748_3
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(1773..3050)
DNA (1278bp) protein (426aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H2I8_9SPIR
L3_072_000M1_scaffold_2748_4
unknown

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comp(3130..3582)
DNA (453bp) protein (151aa)

This feature has no annotations

L3_072_000M1_scaffold_2748_5
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

3759..6869
DNA (3111bp) protein (1037aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HGQ4_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY23987.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
regulator
L3_072_000M1_scaffold_2748_6
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

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6909..7475
DNA (567bp) protein (189aa)
Sigma-24 (FecI-like) n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7J9X9_9FUSO
Sigma-24 (FecI-like) {ECO:0000313|EMBL:CDE59702.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
L3_072_000M1_scaffold_2748_7
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

7491..10454
DNA (2964bp) protein (988aa)
Putative Adenylate cyclase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H2S5_9SPIR
Putative Adenylate cyclase {ECO:0000313|EMBL:CCY23985.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_2748_8
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(10550..11452)
DNA (903bp) protein (301aa)
transmembrane_regions 144..166 id=162856 bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
Uncharacterized protein {ECO:0000313|EMBL:CDE88851.1}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
L3_072_000M1_scaffold_2748_9
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(11631..12668)
DNA (1038bp) protein (346aa)
Glycosyl transferase family 4 conserved region n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HFW6_9SPIR
Glycosyl transferase family 4 conserved region {ECO:0000313|EMBL:CCY23611.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Glycosyl transferase, family 4, conserved region-containing protein
L3_072_000M1_scaffold_2748_10
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(12694..13938)
DNA (1245bp) protein (415aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H1S2_9SPIR
L3_072_000M1_scaffold_2748_11
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(14051..14701)
DNA (651bp) protein (217aa)
Putative pilin protein n=1 Tax=Clostridium sp. CAG:967 RepID=R5KD54_9CLOT
Putative pilin protein {ECO:0000313|EMBL:CCY62989.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
L3_072_000M1_scaffold_2748_12
unknown

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comp(14811..15035)
DNA (225bp) protein (75aa)

This feature has no annotations

L3_072_000M1_scaffold_2748_13
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

15200..16324
DNA (1125bp) protein (375aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Clostridium sp. CAG:768 RepID=R7I0H1_9CLOT
L3_072_000M1_scaffold_2748_14
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

16489..17193
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:768 RepID=R7HTS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE43119.1}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
L3_072_000M1_scaffold_2748_15
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

17243..18502
DNA (1260bp) protein (420aa)
lpdA; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Clostridium sp. CAG:768 RepID=R7I2B7_9CLOT
Dihydrolipoyl dehydrogenase {ECO:0000313|EMBL:CDE45408.1}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
L3_072_000M1_scaffold_2748_16
unknown

Not on your lists

comp(18598..19065)
DNA (468bp) protein (156aa)

This feature has no annotations

L3_072_000M1_scaffold_2748_17
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

19123..19965
DNA (843bp) protein (281aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
Lipoyl synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KXG0_9FIRM id=162253 bin=MEL_C1 species=Oribacterium sinus genus=Oribacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=MEL_C1 organism_group=Melainabacteria
LipA2; lipoyl synthase
L3_072_000M1_scaffold_2748_18
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

20480..21139
DNA (660bp) protein (220aa)
N utilization substance protein B homolog n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H5X8_9SPIR
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
nusB; transcription antitermination protein NusB
L3_072_000M1_scaffold_2748_19
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

21139..22053
DNA (915bp) protein (305aa)
FtsY n=3 Tax=Synechococcus elongatus RepID=Q8GIR8_SYNE7 id=162511 bin=MEL_C1 species=Synechococcus elongatus genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=MEL_C1 organism_group=Melainabacteria
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
signal recognition particle-docking protein FtsY
L3_072_000M1_scaffold_2748_20
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

22064..22762
DNA (699bp) protein (233aa)
Peptidase M14 carboxypeptidase A n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HFG4_9SPIR
Peptidase M14 carboxypeptidase A {ECO:0000313|EMBL:CCY23471.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
zinc carboxypeptidase
L3_072_000M1_scaffold_2748_21
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(22775..23221)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:967 RepID=R5K979_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY63330.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
L3_072_000M1_scaffold_2748_22
unknown

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comp(23368..23904)
DNA (537bp) protein (179aa)

This feature has no annotations

L3_072_000M1_scaffold_2748_23
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

24044..25417
DNA (1374bp) protein (458aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
UniRef90_B8JDH1 Cysteine--tRNA ligase n=3 Tax=Anaeromyxobacter RepID=SYC_ANAD2 id=162004 bin=MEL_C1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=MEL_C1 organism_group=Melainabacteria
L3_072_000M1_scaffold_2748_24
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

comp(25454..26476)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:768 RepID=R7HYJ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX80502.1}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
Displaying 24 items

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