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L3_072_000M1_scaffold_2876

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_2876_1
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

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comp(2..448)
DNA (447bp) protein (149aa)
Diguanylate cyclase (GGDEF domain) n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HIQ0_9SPIR
Diguanylate cyclase (GGDEF domain) {ECO:0000313|EMBL:CCY24702.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
hypothetical protein
L3_072_000M1_scaffold_2876_2
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

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comp(477..644)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H5C7_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY24703.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_2876_3
Fusobacterium sp. CAG:815, Melainabacteria, Bacteria

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899..1102
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7LV86_9FUSO
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1262901 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:815.;"
rpmE; 50S ribosomal protein L31
L3_072_000M1_scaffold_2876_4
Clostridium sp. CAG:768, Melainabacteria, Bacteria

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1219..1935
DNA (717bp) protein (239aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX n=1 Tax=Clostridium sp. CAG:768 RepID=R7HXI3_9CLOT
L3_072_000M1_scaffold_2876_5
Clostridium sp. CAG:715, Melainabacteria, Bacteria

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1919..2512
DNA (594bp) protein (198aa)
coiled-coil 2..23 id=162838 bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
Uncharacterized protein {ECO:0000313|EMBL:CCX80034.1}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
L3_072_000M1_scaffold_2876_6
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

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comp(2609..3919)
DNA (1311bp) protein (437aa)
H(+)-transporting two-sector ATPase (EC:3.6.3.14)
H(+)-transporting two-sector ATPase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6S1_9SPIR
H(+)-transporting two-sector ATPase {ECO:0000313|EMBL:CCY25178.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_2876_7
Clostridium sp. CAG:967, Melainabacteria, Bacteria

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comp(3934..4614)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:967 RepID=R5KB40_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY63950.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
L3_072_000M1_scaffold_2876_8
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

4780..6609
DNA (1830bp) protein (610aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
Sensor protein kdpD n=9 Tax=Ralstonia RepID=A3RZ54_RALSL id=162017 bin=MEL_C1 species=unknown genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=MEL_C1 organism_group=Melainabacteria
osmosensitive K+ channel histidine kinase
L3_072_000M1_scaffold_2876_9
Clostridium sp. CAG:967, Melainabacteria, Bacteria

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6593..7282
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:967 RepID=R5KB18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY63948.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_072_000M1_scaffold_2876_10
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(7819..8319)
DNA (501bp) protein (167aa)
Translation initiation factor IF-3 n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H5C2_9SPIR
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
translation initiation factor IF-3
L3_072_000M1_scaffold_2876_11
unknown

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8594..8764
DNA (171bp) protein (57aa)

This feature has no annotations

L3_072_000M1_scaffold_2876_12
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

8906..11020
DNA (2115bp) protein (705aa)
Tetratricopeptide TPR_2 n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H4R5_9SPIR
Tetratricopeptide TPR_2 {ECO:0000313|EMBL:CCY24700.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
hypothetical protein
L3_072_000M1_scaffold_2876_13
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

11010..11987
DNA (978bp) protein (326aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium sp. CAG:967 RepID=R5KRR1_9CLOT
tRNA-dihydrouridine synthase
L3_072_000M1_scaffold_2876_14
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

12046..12420
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:715 RepID=R5DT58_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX79897.1}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
L3_072_000M1_scaffold_2876_15
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists


comp(12534..14291)
DNA (1758bp) protein (586aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HIF8_9SPIR
Displaying 15 items

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