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L3_072_000M1_scaffold_1842

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1842_1
unknown

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142..1920
DNA (1779bp) protein (593aa)

This feature has no annotations

L3_072_000M1_scaffold_1842_2
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

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comp(2075..2605)
DNA (531bp) protein (177aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6R8_9SPIR
L3_072_000M1_scaffold_1842_3
Clostridium sp. CAG:967, Melainabacteria, Bacteria

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comp(2645..3988)
DNA (1344bp) protein (448aa)
Glycosyl transferase family 2 n=1 Tax=Clostridium sp. CAG:967 RepID=R5KC90_9CLOT
Glycosyl transferase family 2 {ECO:0000313|EMBL:CCY62664.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
probable glycosyl transferase
L3_072_000M1_scaffold_1842_4
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

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4181..4459
DNA (279bp) protein (93aa)
DNA-binding protein HU n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H7D6_9SPIR
DNA-binding protein HU {ECO:0000313|EMBL:CCY25398.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
nucleoid protein Hbs
L3_072_000M1_scaffold_1842_5
Clostridium sp. CAG:768, Melainabacteria, Bacteria

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4561..5343
DNA (783bp) protein (261aa)
Beta-lactamase domain protein n=1 Tax=Clostridium sp. CAG:768 RepID=R7HSI0_9CLOT
Beta-lactamase domain protein {ECO:0000313|EMBL:CDE42654.1}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
hypothetical protein
L3_072_000M1_scaffold_1842_6
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

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comp(5346..6107)
DNA (762bp) protein (254aa)
General secretion pathway protein G n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H7P6_9SPIR
General secretion pathway protein G {ECO:0000313|EMBL:CCY24099.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_1842_7
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

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6207..6431
DNA (225bp) protein (75aa)
Transcriptional regulator XRE family n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7J9L7_9FUSO
Transcriptional regulator XRE family {ECO:0000313|EMBL:CDE60550.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
putative HTH-type transcriptional regulator type 3
L3_072_000M1_scaffold_1842_8
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

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6545..6754
DNA (210bp) protein (70aa)
50S ribosomal protein L35 n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HG28_9SPIR
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
rpl35; 50S ribosomal protein L35
L3_072_000M1_scaffold_1842_9
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists


6764..7114
DNA (351bp) protein (117aa)
50S ribosomal protein L20 n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7JA95_9FUSO
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
rplT; 50S ribosomal protein L20
L3_072_000M1_scaffold_1842_10
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

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comp(7190..8122)
DNA (933bp) protein (311aa)
Putative uncharacterized protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UDN9_9RHOB id=470561 bin=MEL_C2 species=Oceanicaulis sp. HTCC2633 genus=Oceanicaulis taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=MEL_C2 organism_group=Melainabacteria
Uncharacterized protein {ECO:0000313|EMBL:CCZ49558.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
hypothetical protein
L3_072_000M1_scaffold_1842_11
unknown

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8275..8454
DNA (180bp) protein (60aa)

This feature has no annotations

L3_072_000M1_scaffold_1842_12
unknown

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8496..8858
DNA (363bp) protein (121aa)

This feature has no annotations

L3_072_000M1_scaffold_1842_13
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

8887..9465
DNA (579bp) protein (193aa)
UPF0234 protein BN819_01795 n=1 Tax=Clostridium sp. CAG:967 RepID=R5KRJ3_9CLOT
UPF0234 protein BN819_01795 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
nucleotide-binding protein
L3_072_000M1_scaffold_1842_14
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(9573..9929)
DNA (357bp) protein (119aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Aspartate 1-decarboxylase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HH39_9SPIR
aspartate alpha-decarboxylase
L3_072_000M1_scaffold_1842_15
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(10047..11774)
DNA (1728bp) protein (576aa)
Alpha-amylase n=1 Tax=Clostridium sp. CAG:967 RepID=R5KPL6_9CLOT
Alpha-amylase {ECO:0000313|EMBL:CCY63041.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
alpha-amlyase
L3_072_000M1_scaffold_1842_16
Clostridium sp. CAG:715, Melainabacteria, Bacteria

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comp(11767..14370)
DNA (2604bp) protein (868aa)
transmembrane_regions 808..830 id=151953 bin=MEL_A1 species=MEL_A1 genus=MEL_A1 taxon_order=MEL_A1 taxon_class=MEL_A1 phylum=Melainabacteria tax=MEL_A1 organism_group=Melainabacteria
Uncharacterized protein {ECO:0000313|EMBL:CCX80245.1}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
L3_072_000M1_scaffold_1842_17
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(14372..15400)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7JA75_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:CDE60523.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
L3_072_000M1_scaffold_1842_18
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(15520..16365)
DNA (846bp) protein (282aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
uppP; Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Clostridium sp. CAG:729 RepID=R7LMR3_9CLOT
L3_072_000M1_scaffold_1842_19
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(16374..16736)
DNA (363bp) protein (121aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HJ75_9SPIR
6-pyruvoyl tetrahydrobiopterin synthase
L3_072_000M1_scaffold_1842_20
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(16766..17266)
DNA (501bp) protein (167aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YrbI family n=1 Tax=Clostridium sp. CAG:967 RepID=R5KPL3_9CLOT
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YrbI family {ECO:0000313|EMBL:CCY63036.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
L3_072_000M1_scaffold_1842_21
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(17269..18258)
DNA (990bp) protein (330aa)
arabinose-5-phosphate isomerase (EC:5.3.1.13)
KpsF/GutQ family protein n=1 Tax=Clostridium sp. CAG:768 RepID=R7I1T2_9CLOT
KpsF/GutQ family protein {ECO:0000313|EMBL:CDE45605.1}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
L3_072_000M1_scaffold_1842_22
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

18330..18647
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:967 RepID=R5KDC1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY63034.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
L3_072_000M1_scaffold_1842_23
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(18717..19841)
DNA (1125bp) protein (375aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H2Z0_9SPIR
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:CCY24030.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
DegT/DnrJ/EryC1/StrS aminotransferase
Displaying 23 items

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