ggKbase home page

L3_072_000M1_scaffold_162

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_162_1
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(158..1993)
DNA (1836bp) protein (612aa)
Peptidase U32 family protein n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7J655_9FUSO
Peptidase U32 family protein {ECO:0000313|EMBL:CDE59414.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
collagenase
L3_072_000M1_scaffold_162_2
unknown

Not on your lists

2065..2406
DNA (342bp) protein (114aa)

This feature has no annotations

L3_072_000M1_scaffold_162_3
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(2527..3735)
DNA (1209bp) protein (403aa)
Alcohol dehydrogenase class IV n=1 Tax=Clostridium sp. CAG:967 RepID=R5KMQ1_9CLOT
Alcohol dehydrogenase class IV {ECO:0000313|EMBL:CCY62386.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
Iron-containing alcohol dehydrogenase
L3_072_000M1_scaffold_162_4
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(3806..4789)
DNA (984bp) protein (328aa)
hypothetical protein id=471281 bin=MEL_C2 species=MEL_C2 genus=MEL_C2 taxon_order=MEL_C2 taxon_class=MEL_C2 phylum=Melainabacteria tax=MEL_C2 organism_group=Melainabacteria
Uncharacterized protein family UPF0324 {ECO:0000313|EMBL:CCZ50867.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
hypothetical protein
L3_072_000M1_scaffold_162_5
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(4965..6167)
DNA (1203bp) protein (401aa)
aag:AaeL_AAEL004988 phosphoglycerate kinase; K00927 phosphoglycerate kinase [EC:2.7.2.3] id=162657 bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
phosphoglycerate kinase (EC:2.7.2.3)
L3_072_000M1_scaffold_162_6
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

6319..6780
DNA (462bp) protein (154aa)
Outer membrane protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H1X5_9SPIR
Outer membrane protein {ECO:0000313|EMBL:CCY23680.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_162_7
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

6820..7203
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HG54_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY23716.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
lactoylglutathione lyase
L3_072_000M1_scaffold_162_8
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(7273..8061)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HLV0_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25616.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_162_9
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists


comp(8196..8426)
DNA (231bp) protein (77aa)
30S ribosomal protein S18 n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H608_9SPIR
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
30S ribosomal protein S18
L3_072_000M1_scaffold_162_10
unknown

Not on your lists

comp(8478..8714)
DNA (237bp) protein (79aa)

This feature has no annotations

L3_072_000M1_scaffold_162_11
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(8732..9133)
DNA (402bp) protein (134aa)
Single-stranded DNA-binding protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HJX8_9SPIR
Single-stranded DNA-binding protein {ECO:0000313|EMBL:CCY25122.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_162_12
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists


comp(9176..9475)
DNA (300bp) protein (100aa)
30S ribosomal protein S6 n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6M4_9SPIR
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
30S ribosomal protein s6
L3_072_000M1_scaffold_162_13
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(9534..10415)
DNA (882bp) protein (294aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Clostridium sp. CAG:729 RepID=R7LIR0_9CLOT
L3_072_000M1_scaffold_162_14
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(10474..12387)
DNA (1914bp) protein (638aa)
Cadmium-exporting ATPase n=1 Tax=Clostridium sp. CAG:729 RepID=R7LP51_9CLOT
Cadmium-exporting ATPase {ECO:0000313|EMBL:CDE89886.1}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
zinc-transporting atpase
L3_072_000M1_scaffold_162_15
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12559..12909
DNA (351bp) protein (117aa)
Transcriptional regulator ArsR family n=1 Tax=Clostridium sp. CAG:306 RepID=R6P7H7_9CLOT
Transcriptional regulator ArsR family {ECO:0000313|EMBL:CDC20323.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
transcriptional regulator
L3_072_000M1_scaffold_162_16
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(13375..13845)
DNA (471bp) protein (157aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Acinetobacter sp. CAG:196 RepID=R5T2Q8_9GAMM
aminoacyl-tRNA editing domain protein
L3_072_000M1_scaffold_162_17
Clostridium sp. CAG:813, Melainabacteria, Bacteria

Not on your lists

13964..15004
DNA (1041bp) protein (347aa)
Ankyrin repeat-containing protein n=1 Tax=Clostridium sp. CAG:813 RepID=R7MK15_9CLOT
Ankyrin repeat-containing protein {ECO:0000313|EMBL:CDF00258.1}; TaxID=1262843 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:813.;"
arp; ankyrin repeat-containing protein
L3_072_000M1_scaffold_162_18
unknown

Not on your lists

15743..16150
DNA (408bp) protein (136aa)

This feature has no annotations

L3_072_000M1_scaffold_162_19
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists


16206..17633
DNA (1428bp) protein (476aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:768 RepID=R7HY79_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
ffh; signal recognition particle subunit FFH/SRP54-like protein Ffh
L3_072_000M1_scaffold_162_20
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(17851..19023)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HK45_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25056.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_162_21
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(19042..19635)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H5W0_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25055.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
hypothetical protein
L3_072_000M1_scaffold_162_22
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

19731..22325
DNA (2595bp) protein (865aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
ATP-dependent DNA helicase PcrA n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7J9N6_9FUSO
ATP-dependent DNA helicase PcrA
L3_072_000M1_scaffold_162_23
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

22604..23137
DNA (534bp) protein (178aa)
Hydrolase NUDIX family n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H5W3_9SPIR
Hydrolase NUDIX family {ECO:0000313|EMBL:CCY25060.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
NUDIX hydrolase
L3_072_000M1_scaffold_162_24
Clostridium sp. CAG:813, Melainabacteria, Bacteria

Not on your lists

23137..23970
DNA (834bp) protein (278aa)
Cof-like hydrolase n=1 Tax=Clostridium sp. CAG:813 RepID=R7MHB8_9CLOT
Cof-like hydrolase {ECO:0000313|EMBL:CDE99142.1}; TaxID=1262843 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:813.;"
cof family hydrolase
L3_072_000M1_scaffold_162_25
unknown

Not on your lists

comp(23999..24361)
DNA (363bp) protein (121aa)

This feature has no annotations

L3_072_000M1_scaffold_162_26
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(24479..25846)
DNA (1368bp) protein (456aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
rseP; regulator of sigma E protease (EC:3.4.24.-)
Peptidase M50 n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H5W4_9SPIR
L3_072_000M1_scaffold_162_27
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

26075..27841
DNA (1767bp) protein (589aa)
Glycosyl transferase family 2 n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HJ78_9SPIR
Glycosyl transferase family 2 {ECO:0000313|EMBL:CCY24882.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
hypothetical protein
L3_072_000M1_scaffold_162_28
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

27980..29719
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HBU5_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25549.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_162_29
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(29833..30471)
DNA (639bp) protein (213aa)
rnhC; ribonuclease HIII (fragment) (EC:3.1.26.4); K03471 ribonuclease HIII [EC:3.1.26.4] id=162415 bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
rnhC; ribonuclease HIII (fragment) (EC:3.1.26.4)
L3_072_000M1_scaffold_162_30
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(30471..32621)
DNA (2151bp) protein (717aa)
Penicillin-binding protein 1A family n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HH02_9SPIR
Penicillin-binding protein 1A family {ECO:0000313|EMBL:CCY24082.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
penicillin-binding protein
Displaying items 1-30 of 82 in total

View Taxonomy