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L3_072_000M1_scaffold_330

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_330_1
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

3..758
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6L1_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25350.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_330_2
unknown

Not on your lists

comp(759..2072)
DNA (1314bp) protein (438aa)

This feature has no annotations

L3_072_000M1_scaffold_330_3
Fusobacterium sp. CAG:815, Melainabacteria, Bacteria

Not on your lists

comp(2085..4118)
DNA (2034bp) protein (678aa)
Uncharacterized protein n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7LXC1_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:CDE92716.1}; TaxID=1262901 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:815.;"
L3_072_000M1_scaffold_330_4
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

comp(4208..4456)
DNA (249bp) protein (83aa)
Possible endonuclease n=3 Tax=Lactobacillus RepID=C0WT36_LACBU id=151856 bin=MEL_A1 species=unknown genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=MEL_A1 organism_group=Melainabacteria
Possible endonuclease {ECO:0000313|EMBL:CCX80713.1}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
hypothetical protein
L3_072_000M1_scaffold_330_5
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(4533..4901)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HKK4_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25352.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_330_6
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

5115..5762
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HB62_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25354.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_330_7
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(5811..6935)
DNA (1125bp) protein (375aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HKL0_9SPIR
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CCY25357.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_330_8
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

7043..7273
DNA (231bp) protein (77aa)
GrxC; glutaredoxin id=153054 bin=MEL_A1 species=MEL_A1 genus=MEL_A1 taxon_order=MEL_A1 taxon_class=MEL_A1 phylum=Melainabacteria tax=MEL_A1 organism_group=Melainabacteria
Glutaredoxin {ECO:0000313|EMBL:CCX80717.1}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
GrxC; glutaredoxin
L3_072_000M1_scaffold_330_9
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

7281..8885
DNA (1605bp) protein (535aa)
Hydroxylamine reductase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HB67_9SPIR
Hydroxylamine reductase {ECO:0000313|EMBL:CCY25359.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
6Fe-6S prismane cluster-containing protein
L3_072_000M1_scaffold_330_10
Fusobacterium sp. CAG:815, Melainabacteria, Bacteria

Not on your lists


comp(8934..9404)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7LW14_9FUSO
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262901 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:815.;"
SSU ribosomal protein S7P
L3_072_000M1_scaffold_330_11
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists


comp(9404..9790)
DNA (387bp) protein (129aa)
30S ribosomal protein S12 n=1 Tax=Clostridium sp. CAG:715 RepID=R5DKE6_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
30S ribosomal protein S12
L3_072_000M1_scaffold_330_12
unknown

Not on your lists

10080..10724
DNA (645bp) protein (215aa)

This feature has no annotations

L3_072_000M1_scaffold_330_13
Fusobacterium sp. CAG:815, Melainabacteria, Bacteria

Not on your lists

comp(10725..11222)
DNA (498bp) protein (166aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1262901 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:815.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7LZ48_9FUSO
leuD; 3-isopropylmalate dehydratase small subunit
L3_072_000M1_scaffold_330_14
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

11308..11931
DNA (624bp) protein (208aa)
Phosphoglycerate mutase n=1 Tax=Clostridium sp. CAG:729 RepID=R7LI41_9CLOT
Phosphoglycerate mutase {ECO:0000313|EMBL:CDE88330.1}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
Phosphoglycerate mutase
L3_072_000M1_scaffold_330_15
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(11928..13484)
DNA (1557bp) protein (519aa)
Sll0424 protein n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7JFS3_9FUSO
Sll0424 protein {ECO:0000313|EMBL:CDE61722.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
Fe-S oxidoreductase
L3_072_000M1_scaffold_330_16
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(13486..14520)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HKM0_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25367.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
putative permease
L3_072_000M1_scaffold_330_17
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

14700..15248
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H798_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25368.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_330_18
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(15294..15476)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HB78_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25369.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_330_19
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(15588..16532)
DNA (945bp) protein (315aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Homoserine kinase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6N1_9SPIR
homoserine kinase
L3_072_000M1_scaffold_330_20
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

16683..18065
DNA (1383bp) protein (461aa)
Putative uncharacterized protein n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NI60_METST id=161865 bin=MEL_C1 species=Methanosphaera stadtmanae genus=Methanosphaera taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=MEL_C1 organism_group=Melainabacteria
Uncharacterized protein {ECO:0000313|EMBL:CCY62695.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
hypothetical protein
L3_072_000M1_scaffold_330_21
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(18119..18340)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7JDQ9_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:CDE61728.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
L3_072_000M1_scaffold_330_22
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

18487..19191
DNA (705bp) protein (235aa)
General secretion pathway protein G n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7JCE1_9FUSO
General secretion pathway protein G {ECO:0000313|EMBL:CDE60552.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
L3_072_000M1_scaffold_330_23
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

19253..20551
DNA (1299bp) protein (433aa)
FAD dependent oxidoreductase domain protein n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7JFV9_9FUSO
FAD dependent oxidoreductase domain protein {ECO:0000313|EMBL:CDE61732.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
hypothetical protein
L3_072_000M1_scaffold_330_24
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(20561..21931)
DNA (1371bp) protein (457aa)
hor:Hore_21000 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00359 NADH oxidase [EC:1.6.-.-] id=152876 bin=MEL_A1 species=MEL_A1 genus=MEL_A1 taxon_order=MEL_A1 taxon_class=MEL_A1 phylum=Melainabacteria tax=MEL_A1 organism_group=Melainabacteria
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:CDE88340.1}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
NAD(FAD)-dependent dehydrogenase
L3_072_000M1_scaffold_330_25
unknown

Not on your lists

comp(21981..22121)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_072_000M1_scaffold_330_26
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

22287..22676
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HB88_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25379.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_072_000M1_scaffold_330_27
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(22678..23433)
DNA (756bp) protein (252aa)
Carbohydrate ABC transporter membrane protein 1 CUT1 family n=1 Tax=Clostridium sp. CAG:768 RepID=R7HUY2_9CLOT
Carbohydrate ABC transporter membrane protein 1 CUT1 family {ECO:0000313|EMBL:CDE42748.1}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
putative ABC transporter permease protein
L3_072_000M1_scaffold_330_28
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

23643..25100
DNA (1458bp) protein (486aa)
phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8] id=161926 bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
phosphomannomutase/phosphoglucomutase (EC:5.4.2.8 5.4.2.2)
Phosphomannomutase {ECO:0000313|EMBL:CDE61742.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
L3_072_000M1_scaffold_330_29
unknown

Not on your lists

25105..25683
DNA (579bp) protein (193aa)

This feature has no annotations

L3_072_000M1_scaffold_330_30
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(25717..25941)
DNA (225bp) protein (75aa)
Helix-turn-helix domain protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HKN5_9SPIR
Helix-turn-helix domain protein {ECO:0000313|EMBL:CCY25382.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
hypothetical protein
Displaying items 1-30 of 93 in total

View Taxonomy