ggKbase home page

L3_072_000M1_scaffold_2862

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_2862_1
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67..1203)
DNA (1137bp) protein (379aa)
Bacterial cell division membrane protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G2F4_9PROT
Bacterial cell division membrane protein {ECO:0000313|EMBL:CDE21305.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
FtsW2; cell division membrane protein
L3_072_000M1_scaffold_2862_2
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1200..2540)
DNA (1341bp) protein (447aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G311_9PROT
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
L3_072_000M1_scaffold_2862_3
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2549..3529)
DNA (981bp) protein (327aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
mraY; phospho-N-acetylmuramoyl-pentapeptide transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G5L6_9PROT
L3_072_000M1_scaffold_2862_4
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(3526..4989)
DNA (1464bp) protein (488aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GJY0_9FIRM
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
L3_072_000M1_scaffold_2862_5
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4986..6677)
DNA (1692bp) protein (564aa)
stage V sporulation protein D (EC:2.4.1.129)
Stage V sporulation protein D n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K430_9FIRM
Stage V sporulation protein D {ECO:0000313|EMBL:CDE71060.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
L3_072_000M1_scaffold_2862_6
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6740..7408)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G3M7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE21318.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_2862_7
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7423..8355)
DNA (933bp) protein (311aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
rsmH; ribosomal RNA small subunit methyltransferase H (EC:2.1.1.199)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G1K3_9PROT
L3_072_000M1_scaffold_2862_8
Thermoanaerobacter italicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8356..8772)
DNA (417bp) protein (139aa)
Protein MraZ n=2 Tax=Thermoanaerobacter RepID=D3T3E5_THEIA
MraZ protein
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=580331 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter italicus (strain DSM 9252 / Ab9).;"
L3_072_000M1_scaffold_2862_9
Leptospira borgpetersenii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(8912..9595)
DNA (684bp) protein (228aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1049776 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira borgpetersenii serovar Mini str. 201000851.;"
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=2 Tax=Leptospira borgpetersenii RepID=M6J8X5_LEPBO
L3_072_000M1_scaffold_2862_10
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9760..10041
DNA (282bp) protein (94aa)
30S ribosomal protein S20 n=1 Tax=Clostridium sp. CAG:389 RepID=R7LQU1_9CLOT
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
rpsT; 30S ribosomal protein S20
L3_072_000M1_scaffold_2862_11
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(10212..11810)
DNA (1599bp) protein (533aa)
CTP synthase (EC:6.3.4.2)
CTP synthase id=3191261 bin=GWF2_Clostridiales_38_85 species=Clostridium leptum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Tax=GWF2_Clostridiales_38_85_curated
L3_072_000M1_scaffold_2862_12
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11821..12372)
DNA (552bp) protein (184aa)
ANTAR domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QHM7_9CLOT
ANTAR domain protein {ECO:0000313|EMBL:EKY27431.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
Response regulator with putative antiterminator output domain
L3_072_000M1_scaffold_2862_13
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12386..13639)
DNA (1254bp) protein (418aa)
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase, beta-grasp domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QID3_9CLOT
Glutamine synthetase, beta-grasp domain protein {ECO:0000313|EMBL:EKY27430.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
L3_072_000M1_scaffold_2862_14
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13922..14419
DNA (498bp) protein (166aa)
Glutamine synthetase catalytic region n=6 Tax=Clostridium thermocellum RepID=E6UMC3_CLOTL
Glutamine synthetase {ECO:0000313|EMBL:GAE87030.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
glutamine synthetase
Displaying 14 items

View Taxonomy