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L3_072_000M1_scaffold_1189

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1189_1
unknown

Not on your lists

431..985
DNA (555bp) protein (185aa)

This feature has no annotations

L3_072_000M1_scaffold_1189_2
Coprobacillus sp. CAG:698, Tenericutes, Bacteria

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1074..2450
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:698 RepID=R5G2Y2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY06846.1}; TaxID=1262856 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:698.;"
L3_072_000M1_scaffold_1189_3
unknown

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2450..2878
DNA (429bp) protein (143aa)

This feature has no annotations

L3_072_000M1_scaffold_1189_4
unknown

Not on your lists

2875..3333
DNA (459bp) protein (153aa)

This feature has no annotations

L3_072_000M1_scaffold_1189_5
Coprobacillus sp. CAG:698, Tenericutes, Bacteria

Not on your lists

3352..4143
DNA (792bp) protein (264aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=1262856 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:698.;"
prepilin peptidase (EC:3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Coprobacillus sp. CAG:698 RepID=R5FT52_9FIRM
L3_072_000M1_scaffold_1189_6
Coprobacillus sp. CAG:698, Tenericutes, Bacteria

Not on your lists

4147..5421
DNA (1275bp) protein (425aa)
Bacterial type II secretion system F domain protein n=1 Tax=Coprobacillus sp. CAG:698 RepID=R5FP45_9FIRM
Bacterial type II secretion system F domain protein {ECO:0000313|EMBL:CCY06850.1}; TaxID=1262856 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:698.;"
type II secretory pathway, component PulF
L3_072_000M1_scaffold_1189_7
Coprobacillus sp. CAG:698, Tenericutes, Bacteria

Not on your lists

5431..7128
DNA (1698bp) protein (566aa)
Type II/IV secretion system family protein n=1 Tax=Coprobacillus sp. CAG:698 RepID=R5G2Y8_9FIRM
Type II/IV secretion system family protein {ECO:0000313|EMBL:CCY06851.1}; TaxID=1262856 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:698.;"
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
L3_072_000M1_scaffold_1189_8
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7298..8185
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y4A4_9FIRM
dihydrodipicolinate synthase
L3_072_000M1_scaffold_1189_9
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8195..8926
DNA (732bp) protein (244aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
dapB1; dihydrodipicolinate reductase (EC:1.17.1.8)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XWY0_9FIRM
L3_072_000M1_scaffold_1189_10
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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8923..9768
DNA (846bp) protein (282aa)
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase id=3017469 bin=GWF2_Clostridiales_38_85 species=Clostridium methylpentosum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Tax=GWF2_Clostridiales_38_85_curated
L3_072_000M1_scaffold_1189_11
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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9758..10936
DNA (1179bp) protein (393aa)
LL-diaminopimelate aminotransferase (EC:2.6.1.83)
LL-diaminopimelate aminotransferase id=3017474 bin=GWF2_Clostridiales_38_85 species=Clostridium methylpentosum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Tax=GWF2_Clostridiales_38_85_curated
L3_072_000M1_scaffold_1189_12
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10947..12242
DNA (1296bp) protein (432aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
lysA; Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YED4_9FIRM
L3_072_000M1_scaffold_1189_13
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12480..13493
DNA (1014bp) protein (338aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Uncharacterized protein n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K8P6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE72158.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
L3_072_000M1_scaffold_1189_14
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13496..14347
DNA (852bp) protein (284aa)
Prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7KAU5_9FIRM
Prephenate dehydrogenase {ECO:0000313|EMBL:CDE72157.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
L3_072_000M1_scaffold_1189_15
Coriobacteriaceae bacterium BV3Ac1, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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14344..15363
DNA (1020bp) protein (340aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1111135 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae.;" source="Coriobacteriaceae bacterium BV3Ac1.;"
3-dehydroquinate synthase n=1 Tax=Coriobacteriaceae bacterium BV3Ac1 RepID=U2U1N0_9ACTN
aroB; 3-dehydroquinate synthase
L3_072_000M1_scaffold_1189_16
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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15363..16610
DNA (1248bp) protein (416aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5ML49_9FIRM
Tax=BJP_IG2069_Clostridiales_48_15
L3_072_000M1_scaffold_1189_17
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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16591..17664
DNA (1074bp) protein (358aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
aroC; Chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SH82_9FIRM
L3_072_000M1_scaffold_1189_18
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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17657..18796
DNA (1140bp) protein (380aa)
prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K8J8_9FIRM
Prephenate dehydratase {ECO:0000313|EMBL:CDE72151.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
L3_072_000M1_scaffold_1189_19
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18793..20007
DNA (1215bp) protein (405aa)
Shikimate dehydrogenase/shikimate kinase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8W0_9FIRM
Shikimate dehydrogenase/shikimate kinase {ECO:0000313|EMBL:CDB41876.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
shikimate 5-dehydrogenase
L3_072_000M1_scaffold_1189_20
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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19988..20431
DNA (444bp) protein (148aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
3-dehydroquinate dehydratase, type II (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AWQ7_9FIRM
L3_072_000M1_scaffold_1189_21
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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20740..22113
DNA (1374bp) protein (458aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=555088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
Pyridoxal-phosphate dependent TrpB-like enzyme n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJU4_9FIRM
L3_072_000M1_scaffold_1189_22
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22502..24127)
DNA (1626bp) protein (542aa)
60 kDa chaperonin n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FYG8_9PROT
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
molecular chaperone GroEL
L3_072_000M1_scaffold_1189_23
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24143..24427)
DNA (285bp) protein (95aa)
10 kDa chaperonin n=1 Tax=Clostridium sp. CAG:349 RepID=R6XTP6_9CLOT
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
co-chaperonin GroES
L3_072_000M1_scaffold_1189_24
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24634..25098
DNA (465bp) protein (155aa)
dCMP deaminase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B279_9CLOT
dCMP deaminase {ECO:0000313|EMBL:CCX49675.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
deoxycytidylate deaminase
L3_072_000M1_scaffold_1189_25
Firmicutes bacterium CAG:631, Firmicutes, Bacteria

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comp(25665..26981)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:631 RepID=R5V5K4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ85610.1}; TaxID=1262996 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:631.;"
hemolysin
L3_072_000M1_scaffold_1189_26
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27335..27535)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G1P3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE21364.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_1189_27
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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27784..28410
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G3R5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE21363.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Thiamine transporter protein (Thia_YuaJ).
L3_072_000M1_scaffold_1189_28
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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28422..29189
DNA (768bp) protein (256aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
type III pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G5Q8_9PROT
L3_072_000M1_scaffold_1189_29
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29186..30487
DNA (1302bp) protein (434aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Clostridium sp. CAG:349 RepID=R6XR88_9CLOT
L3_072_000M1_scaffold_1189_30
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30706..31506)
DNA (801bp) protein (267aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D222_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEG54622.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
AraC family transcriptional regulator
Displaying items 1-30 of 38 in total

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