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L3_072_000M1_scaffold_1367

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1367_1
unknown

Not on your lists

comp(1..384)
DNA (384bp) protein (128aa)

This feature has no annotations

L3_072_000M1_scaffold_1367_2
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(386..2155)
DNA (1770bp) protein (590aa)
Oligoendopeptidase F n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G213_9PROT
Oligoendopeptidase F {ECO:0000313|EMBL:CDE21494.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
oligopeptidase PepB
L3_072_000M1_scaffold_1367_3
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(2168..3523)
DNA (1356bp) protein (452aa)
UPF0210 protein BN810_00883 n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K6X9_9FIRM
UPF0210 protein BN810_00883 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
hypothetical protein
L3_072_000M1_scaffold_1367_4
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3533..3802)
DNA (270bp) protein (90aa)
UPF0237 protein HMPREF1545_02447 n=2 Tax=Oscillibacter RepID=U2Q7J1_9FIRM
UPF0237 protein HMPREF1546_01320 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_072_000M1_scaffold_1367_5
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3817..4329)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G429_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE21493.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_1367_6
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4345..4992)
DNA (648bp) protein (216aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=386415 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi (strain NT).;"
Signal peptidase I n=1 Tax=Clostridium novyi (strain NT) RepID=A0Q2M8_CLONN
lepB; signal peptidase I
L3_072_000M1_scaffold_1367_7
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5180..6838)
DNA (1659bp) protein (553aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G2U2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE21490.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_1367_8
Peptostreptococcus anaerobius CAG:621, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6847..9537)
DNA (2691bp) protein (897aa)
SMC domain protein n=1 Tax=Peptostreptococcus anaerobius CAG:621 RepID=R5JK42_9FIRM
SMC domain protein {ECO:0000313|EMBL:CCY49396.1}; TaxID=1263100 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus; environmental samples.;" source="Peptostreptococcus anaerobius CAG:621.;"
SMC domain-containing protein
L3_072_000M1_scaffold_1367_9
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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comp(9534..10703)
DNA (1170bp) protein (390aa)
Exonuclease SbcD id=2273134 bin=GWB2_Clostridiales_37_7 species=Desulfosporosinus orientis genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWB2_Clostridiales_37_7_curated
L3_072_000M1_scaffold_1367_10
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10840..12264
DNA (1425bp) protein (475aa)
Primosome DnaD subunit n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G209_9PROT
Primosome DnaD subunit {ECO:0000313|EMBL:CDE21489.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hypothetical protein
L3_072_000M1_scaffold_1367_11
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12267..13184
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:349 RepID=R6WH56_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD08745.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
DNA replication protein DnaC
L3_072_000M1_scaffold_1367_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13297..15105)
DNA (1809bp) protein (603aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXF8_9FIRM
L3_072_000M1_scaffold_1367_13
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15106..15531)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G568_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE21172.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
fucose isomerase
L3_072_000M1_scaffold_1367_14
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15630..16670)
DNA (1041bp) protein (347aa)
ABC sugar transporter periplasmic ligand binding protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FX74_9PROT
ABC sugar transporter periplasmic ligand binding protein {ECO:0000313|EMBL:CDE19859.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
periplasmic binding protein/LacI transcriptional regulator
L3_072_000M1_scaffold_1367_15
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16713..18239)
DNA (1527bp) protein (509aa)
Inner-membrane translocator n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FZC7_9PROT
Inner-membrane translocator {ECO:0000313|EMBL:CDE19858.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
inner-membrane translocator
L3_072_000M1_scaffold_1367_16
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18241..19740)
DNA (1500bp) protein (500aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FY88_9PROT
ABC transporter
L3_072_000M1_scaffold_1367_17
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19989..20912
DNA (924bp) protein (308aa)
Transcriptional regulator AraC family n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G1J4_9PROT
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDE19852.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
AraC family transcriptional regulator
L3_072_000M1_scaffold_1367_18
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20964..21602)
DNA (639bp) protein (213aa)
beta-phosphoglucomutase (EC:5.4.2.6)
Beta-phosphoglucomutase n=1 Tax=Roseburia sp. CAG:45 RepID=R6NQU4_9FIRM
Beta-phosphoglucomutase {ECO:0000313|EMBL:CDC13590.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
L3_072_000M1_scaffold_1367_19
Corallococcus sp. CAG:1435, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21640..21975)
DNA (336bp) protein (112aa)
Putative nitrogen regulatory protein P-II n=1 Tax=Corallococcus sp. CAG:1435 RepID=R5WFI4_9DELT
Putative nitrogen regulatory protein P-II {ECO:0000313|EMBL:CCZ94511.1}; TaxID=1262867 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; environmental samples.;" source="Corallococcus sp. CAG:1435.;"
putative nitrogen regulatory protein P-II
L3_072_000M1_scaffold_1367_20
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21975..22319)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H8I7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOS63063.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_072_000M1_scaffold_1367_21
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22316..22873)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LW67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63064.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_072_000M1_scaffold_1367_22
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22857..23921)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5APX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX42802.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
hypothetical protein
L3_072_000M1_scaffold_1367_23
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23985..24692)
DNA (708bp) protein (236aa)
Signal recognition particle receptor FtsY n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FGR9_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
signal recognition particle-docking protein ftsy
Displaying 23 items

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