ggKbase home page

L3_072_000M1_scaffold_1455

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1455_1
unknown

Not on your lists

209..433
DNA (225bp) protein (75aa)

This feature has no annotations

L3_072_000M1_scaffold_1455_2
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

426..2270
DNA (1845bp) protein (615aa)
Ferrous iron transport protein B n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PVF5_9FIRM
Ferrous iron transport protein B {ECO:0000313|EMBL:CCZ20223.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
feoB; ferrous iron transport protein B
L3_072_000M1_scaffold_1455_3
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2230..3033
DNA (804bp) protein (268aa)
Pseudouridine synthase n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FXA3_9FIRM
Pseudouridine synthase {ECO:0000313|EMBL:CCY04836.1}; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
RluA family pseudouridine synthase
L3_072_000M1_scaffold_1455_4
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3034..4776
DNA (1743bp) protein (581aa)
Fibronectin-binding protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FUC2_9PROT
Fibronectin-binding protein {ECO:0000313|EMBL:CDE18894.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
putative RNA-binding protein, snRNP like protein
L3_072_000M1_scaffold_1455_5
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4842..6206
DNA (1365bp) protein (455aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Trigger factor n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FVM4_9PROT
FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor
L3_072_000M1_scaffold_1455_6
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

6255..6848
DNA (594bp) protein (198aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7KBX4_9FIRM
L3_072_000M1_scaffold_1455_7
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6874..8100
DNA (1227bp) protein (409aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FW62_9PROT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
clpX; ATP-dependent protease ATP-binding subunit ClpX
L3_072_000M1_scaffold_1455_8
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8232..9650
DNA (1419bp) protein (473aa)
aspA1; aspartate ammonia-lyase (EC:4.3.1.1)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R705_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF45883.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
L3_072_000M1_scaffold_1455_9
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9751..10302
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MD03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR97823.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
conserved hypothetical protein
L3_072_000M1_scaffold_1455_10
unknown

Not on your lists

comp(10349..10507)
DNA (159bp) protein (53aa)

This feature has no annotations

L3_072_000M1_scaffold_1455_11
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10634..10969
DNA (336bp) protein (112aa)
Transcriptional regulator ArsR family n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G0S7_9PROT
Transcriptional regulator ArsR family {ECO:0000313|EMBL:CDE21074.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
transcriptional regulator, ArsR family
L3_072_000M1_scaffold_1455_12
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11250..13082
DNA (1833bp) protein (611aa)
UvrABC system protein C n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FYD4_9PROT
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
excinuclease ABC subunit C
L3_072_000M1_scaffold_1455_13
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13072..13950
DNA (879bp) protein (293aa)
Cof-like hydrolase n=1 Tax=Clostridium sp. CAG:349 RepID=R6XR16_9CLOT
Cof-like hydrolase {ECO:0000313|EMBL:CDD08777.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
hypothetical protein
L3_072_000M1_scaffold_1455_14
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13967..16294
DNA (2328bp) protein (776aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
lonA; ATP-dependent protease LonA (EC:3.4.21.53)
Lon protease n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K5D5_9FIRM
L3_072_000M1_scaffold_1455_15
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16291..16902
DNA (612bp) protein (204aa)
Probable GTP-binding protein EngB n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FV75_9PROT
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
HSR1-like GTP-binding protein
L3_072_000M1_scaffold_1455_16
unknown

Not on your lists

17306..17773
DNA (468bp) protein (156aa)

This feature has no annotations

L3_072_000M1_scaffold_1455_17
unknown

Not on your lists

18058..18549
DNA (492bp) protein (164aa)

This feature has no annotations

L3_072_000M1_scaffold_1455_18
Acholeplasma palmae, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

18596..20143
DNA (1548bp) protein (516aa)
Similar to spore coat protein CotH n=1 Tax=Acholeplasma palmae (strain ATCC 49389 / J233) RepID=U4KQJ7_ACHPJ
cotH; similar to spore coat protein CotH
Similar to spore coat protein CotH {ECO:0000313|EMBL:CCV64700.1}; TaxID=38986 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma.;" source="Acholeplasma palmae.;"
L3_072_000M1_scaffold_1455_19
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20352..21842
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6SXX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC62374.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
S-layer protein
L3_072_000M1_scaffold_1455_20
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22070..23620)
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6SXV7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC60261.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
hypothetical protein
Displaying 20 items

View Taxonomy