ggKbase home page

L3_072_000M1_scaffold_42

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_42_1
unknown

Not on your lists

comp(287..949)
DNA (663bp) protein (221aa)

This feature has no annotations

L3_072_000M1_scaffold_42_2
unknown

Not on your lists

comp(966..1787)
DNA (822bp) protein (274aa)

This feature has no annotations

L3_072_000M1_scaffold_42_3
Pontibacillus litoralis, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1830..2375)
DNA (546bp) protein (182aa)
Putative RNA polymerase sigma factor SigX n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TVA8_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1385512 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Pontibacillus.;" source="Pontibacillus litoralis JSM 072002.;"
RNA polymerase sigma factor SigW
L3_072_000M1_scaffold_42_4
unknown

Not on your lists

comp(2521..3774)
DNA (1254bp) protein (418aa)

This feature has no annotations

L3_072_000M1_scaffold_42_5
unknown

Not on your lists

comp(3796..4353)
DNA (558bp) protein (186aa)

This feature has no annotations

L3_072_000M1_scaffold_42_6
Paenibacillus curdlanolyticus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4335..5276)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Paenibacillus massiliensis RepID=UPI00037FC58D
Beta-ketoacyl synthase {ECO:0000313|EMBL:EFM08505.1}; TaxID=717606 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus curdlanolyticus YK9.;"
subfamily IIIC HAD-superfamily phosphatase
L3_072_000M1_scaffold_42_7
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(5677..6570)
DNA (894bp) protein (298aa)
Ribokinase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L4R9_HALH1
ribokinase
Tax=CG_Arma_01
L3_072_000M1_scaffold_42_8
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6567..7103)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P3E2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12981.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_072_000M1_scaffold_42_9
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(7105..8253)
DNA (1149bp) protein (383aa)
id=4609642 bin=GWF2_Lentisphaerae_50_93 species=Streptomyces bingchenggensis genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
glycosyl hydrolase family 32 domain-containing protein
Tax=GWF2_Lentisphaerae_50_93_curated
L3_072_000M1_scaffold_42_10
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8263..10056)
DNA (1794bp) protein (598aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G1W8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE19992.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hypothetical protein
L3_072_000M1_scaffold_42_11
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10148..11974)
DNA (1827bp) protein (609aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6T7X7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC63936.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
hypothetical protein
L3_072_000M1_scaffold_42_12
GWF2_Tenericutes_57_13_curated, Tenericutes, Bacteria

Not on your lists

comp(11971..12837)
DNA (867bp) protein (289aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family id=4665746 bin=GWF2_Firmicute_57_13 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Firmicute_57_13 organism_group=Firmicute
sugar ABC transporter permease
Tax=GWF2_Tenericutes_57_13_curated
L3_072_000M1_scaffold_42_13
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12839..13759)
DNA (921bp) protein (307aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BKE3_THEXL
ABC transporter permease
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEF18090.1}; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
L3_072_000M1_scaffold_42_14
Paenibacillus sp. FSL R5-808, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13775..15205)
DNA (1431bp) protein (477aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI000360285A
Family 1 extracellular solute-binding protein {ECO:0000313|EMBL:ETT43668.1}; TaxID=1227076 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-808.;"
extracellular solute-binding protein
L3_072_000M1_scaffold_42_15
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15208..16140)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AE2015 RepID=UPI0003B5C2B0
Inosine-uridine preferring nucleoside hydrolase family protein {ECO:0000313|EMBL:KFN11586.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
inosine/uridine-preferring nucleoside hydrolase
L3_072_000M1_scaffold_42_16
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

Not on your lists

comp(16182..18926)
DNA (2745bp) protein (915aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5R368_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ29091.1}; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
hypothetical protein containing two Listeria/Bacterioides repeats
L3_072_000M1_scaffold_42_17
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(18953..20578)
DNA (1626bp) protein (542aa)
hypothetical protein n=1 Tax=Gracilibacillus lacisalsi RepID=UPI00035C9E0F
glycoside hydrolase
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
L3_072_000M1_scaffold_42_18
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(20634..21377)
DNA (744bp) protein (248aa)
Lipolytic protein G-D-S-L family n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6UH31_9FIRM
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:CDC70047.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
L3_072_000M1_scaffold_42_19
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21519..22544)
DNA (1026bp) protein (342aa)
Transcriptional regulator n=3 Tax=Caldanaerobacter subterraneus RepID=Q8RD46_THETN
LacI family transcriptional regulator {ECO:0000313|EMBL:KEZ91673.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
PurR2; transcriptional regulator
L3_072_000M1_scaffold_42_20
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(22737..24347)
DNA (1611bp) protein (537aa)
Family 20 glycoside hydrolase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MR62_9FIRM
Family 20 glycoside hydrolase {ECO:0000313|EMBL:CDB88327.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_072_000M1_scaffold_42_21
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24408..25964)
DNA (1557bp) protein (519aa)
ADP-ribosylation/Crystallin J1 n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6CUL6_PAESJ
ADP-ribosylation/crystallin J1
ADP-ribosylation/Crystallin J1 {ECO:0000313|EMBL:ACT01220.1}; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
L3_072_000M1_scaffold_42_22
Firmicutes bacterium CAG:345, Firmicutes, Bacteria

Not on your lists

comp(25999..26949)
DNA (951bp) protein (317aa)
ABC-type transport system permease component n=1 Tax=Firmicutes bacterium CAG:345 RepID=R6XPI4_9FIRM
ABC-type transport system permease component {ECO:0000313|EMBL:CDD23535.1}; TaxID=1263020 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:345.;"
ABC-type carbohydrate transport system, permease component
L3_072_000M1_scaffold_42_23
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26978..28432)
DNA (1455bp) protein (485aa)
Extracellular solute-binding protein family 1 n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U8K6_ETHHY
putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:CDZ24394.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_072_000M1_scaffold_42_24
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28454..29899)
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FZP3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE20689.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_42_25
Acholeplasma laidlawii, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(29923..30777)
DNA (855bp) protein (285aa)
ABC-type transport system, permease component n=1 Tax=Acholeplasma laidlawii (strain PG-8A) RepID=A9NH46_ACHLI
ABC transporter permease
ABC-type transport system, permease component {ECO:0000313|EMBL:ABX81676.1}; TaxID=441768 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma.;" source="Acholeplasma laidlawii (strain PG-8A).;"
L3_072_000M1_scaffold_42_26
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30853..31800
DNA (948bp) protein (316aa)
Transcriptional regulator AraC family n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G5H7_9PROT
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDE22013.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
AraC family transcriptional regulator
L3_072_000M1_scaffold_42_27
unknown

Not on your lists

comp(31837..34692)
DNA (2856bp) protein (952aa)

This feature has no annotations

L3_072_000M1_scaffold_42_28
unknown

Not on your lists

comp(35489..36019)
DNA (531bp) protein (177aa)

This feature has no annotations

L3_072_000M1_scaffold_42_29
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36858..37646)
DNA (789bp) protein (263aa)
Metal cation transporter ZIP family n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K647_9FIRM
Metal cation transporter ZIP family {ECO:0000313|EMBL:CDE71366.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
zinc/iron permease
L3_072_000M1_scaffold_42_30
unknown

Not on your lists

comp(37781..38344)
DNA (564bp) protein (188aa)

This feature has no annotations

Displaying items 1-30 of 126 in total

View Taxonomy