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L3_072_000M1_scaffold_662

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_662_1
unknown

Not on your lists

comp(81..449)
DNA (369bp) protein (123aa)

This feature has no annotations

L3_072_000M1_scaffold_662_2
Clostridium sp. CAG:302, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(464..814)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:302 RepID=R6LW09_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB91558.1}; TaxID=1262793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:302.;"
L3_072_000M1_scaffold_662_3
unknown

Not on your lists

908..1210
DNA (303bp) protein (101aa)

This feature has no annotations

L3_072_000M1_scaffold_662_4
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1093..1395)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KLK2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY67720.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L3_072_000M1_scaffold_662_5
unknown

Not on your lists

1950..2342
DNA (393bp) protein (131aa)

This feature has no annotations

L3_072_000M1_scaffold_662_6
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2795..3652)
DNA (858bp) protein (286aa)
Putative RNA-binding protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G4S5_9PROT
Putative RNA-binding protein {ECO:0000313|EMBL:CDE22145.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
jag; SpoIIIJ-associated protein
L3_072_000M1_scaffold_662_7
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(3654..5165)
DNA (1512bp) protein (504aa)
Membrane protein insertase YidC n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GWI6_9FIRM
Membrane protein insertase YidC {ECO:0000313|EMBL:CDB26029.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
oxaA; membrane protein OxaA
L3_072_000M1_scaffold_662_8
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5194..5433)
DNA (240bp) protein (80aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EB21_9FIRM
hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
L3_072_000M1_scaffold_662_9
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5430..5750)
DNA (321bp) protein (107aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Ribonuclease P protein component n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I6M8_9FIRM
ribonuclease P protein component
L3_072_000M1_scaffold_662_10
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

Not on your lists


comp(5752..5886)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BTM6_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
50S ribosomal protein L34
L3_072_000M1_scaffold_662_11
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5973..7076)
DNA (1104bp) protein (368aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G4R9_9PROT
L3_072_000M1_scaffold_662_12
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7479..8159
DNA (681bp) protein (227aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G3Y2_9PROT
methyltransferase GidB
L3_072_000M1_scaffold_662_13
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

8156..8602
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S3L4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ45454.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_072_000M1_scaffold_662_14
unknown

Not on your lists

comp(8715..9023)
DNA (309bp) protein (103aa)

This feature has no annotations

L3_072_000M1_scaffold_662_15
BJP_IG2102_Acholeplasmatales_34_18, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(9124..9462)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XUY4_9LACO
zinc-ribbon domain protein
Tax=BJP_IG2102_Acholeplasmatales_34_18
L3_072_000M1_scaffold_662_16
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9496..9834)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KLK2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY67720.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L3_072_000M1_scaffold_662_17
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9867..10193)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW03747.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
L3_072_000M1_scaffold_662_18
Corallococcus sp. CAG:1435, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10475..13996)
DNA (3522bp) protein (1174aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1262867 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; environmental samples.;" source="Corallococcus sp. CAG:1435.;"
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Corallococcus sp. CAG:1435 RepID=R5VWX7_9DELT
pyruvate:ferredoxin (flavodoxin) oxidoreductase
L3_072_000M1_scaffold_662_19
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14156..14992
DNA (837bp) protein (279aa)
Cobalt import ATP-binding protein CbiO {ECO:0000256|HAMAP-Rule:MF_01710}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; Energy-coupling factor transporter ATP-binding protein CbiO {ECO:0000256|HAMAP-Rule:MF_01710}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Cobalt import ATP-binding protein CbiO 1 n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G7G7_9PROT
ABC transporter
L3_072_000M1_scaffold_662_20
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14968..15834
DNA (867bp) protein (289aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
Cobalt import ATP-binding protein CbiO 1 n=1 Tax=Clostridium sp. CAG:349 RepID=R6WSA5_9CLOT
cobalt ABC transporter, ATP-binding protein
L3_072_000M1_scaffold_662_21
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15831..16625
DNA (795bp) protein (265aa)
Cobalt transport protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G454_9PROT
Cobalt transport protein {ECO:0000313|EMBL:CDE21945.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
cbiQ2; cobalt ABC transporter permease
L3_072_000M1_scaffold_662_22
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16622..17368
DNA (747bp) protein (249aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
tRNA pseudouridine synthase A (EC:4.2.1.70)
tRNA pseudouridine synthase A n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G3D4_9PROT
L3_072_000M1_scaffold_662_23
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17563..17994
DNA (432bp) protein (144aa)
50S ribosomal protein L13 n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G5C1_9PROT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
50S ribosomal protein L13
L3_072_000M1_scaffold_662_24
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18012..18425
DNA (414bp) protein (138aa)
30S ribosomal protein S9 n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G7G3_9PROT
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
SSU ribosomal protein S9P
L3_072_000M1_scaffold_662_25
unknown

Not on your lists

comp(18461..18697)
DNA (237bp) protein (79aa)

This feature has no annotations

L3_072_000M1_scaffold_662_26
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18801..20612
DNA (1812bp) protein (604aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G451_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE21940.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_662_27
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21216..21974
DNA (759bp) protein (253aa)
Stage 0 sporulation two-component response regulator (Spo0A) n=1 Tax=Clostridium sp. CAG:349 RepID=R6WPK1_9CLOT
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
response regulator receiver protein
L3_072_000M1_scaffold_662_28
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22094..22591
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G447_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE21935.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hypothetical protein
L3_072_000M1_scaffold_662_29
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22643..22891
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G3C2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE21934.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_072_000M1_scaffold_662_30
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23066..23800)
DNA (735bp) protein (245aa)
UPF0246 protein HMPREF1526_02541 n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VUQ0_9CLOT
UPF0246 protein HMPREF1526_02541 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
hypothetical protein
Displaying items 1-30 of 44 in total

View Taxonomy