ggKbase home page

L3_072_000M1_scaffold_1940

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1940_1
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..231)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0Y4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25377.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_1940_2
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(274..1101)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D4Z9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX73869.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_072_000M1_scaffold_1940_3
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1114..1515)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GIR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25373.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
thioesterase
L3_072_000M1_scaffold_1940_4
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1918..3378)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GVP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25371.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_1940_5
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3375..4310)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GUF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25369.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_1940_6
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4605..5459)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RXE0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF69302.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
calcineurin-like phosphoesterase
L3_072_000M1_scaffold_1940_7
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(5483..6298)
DNA (816bp) protein (272aa)
Phosphatidylinositol diacylglycerol-lyase n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TWW7_9FIRM
Phosphatidylinositol diacylglycerol-lyase {ECO:0000313|EMBL:CDC76680.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
L3_072_000M1_scaffold_1940_8
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6530..6937)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RXD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF69297.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
hypothetical protein
L3_072_000M1_scaffold_1940_9
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6960..7529)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FTV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17963.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
hypothetical protein
L3_072_000M1_scaffold_1940_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7578..8279)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I3N5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41104.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Beta-propeller domains of methanol dehydrogenase type
L3_072_000M1_scaffold_1940_11
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8299..9447)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6QLV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC37538.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
hypothetical protein
L3_072_000M1_scaffold_1940_12

Not on your lists

comp(9474..10226)
DNA (753bp) protein (251aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1RIP2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC43524.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_072_000M1_scaffold_1940_13
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10263..10790)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6XD69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD04292.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_1940_14
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10827..11693)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WJH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD04291.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_1940_15
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11708..13009)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HG73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB24987.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_1940_16
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13025..13549)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GHT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB24988.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_1940_17
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13749..15161)
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GT39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27555.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Putative virion core protein (lumpy skin disease virus)
L3_072_000M1_scaffold_1940_18
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15268..16146)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H283_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27556.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_1940_19
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16232..19267)
DNA (3036bp) protein (1012aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HNV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27557.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
conserved hypothetical protein (predicted large exoproteins involved in heme utilization or adhesion)
L3_072_000M1_scaffold_1940_20
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19460..21142)
DNA (1683bp) protein (561aa)
Cohesin domain protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RXE7_9FIRM
Cohesin domain protein {ECO:0000313|EMBL:EFF69309.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
putative phage protein
L3_072_000M1_scaffold_1940_21
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21314..24436)
DNA (3123bp) protein (1041aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H0V2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27559.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
conserved hypothetical protein (predicted large exoproteins involved in heme utilization or adhesion)
L3_072_000M1_scaffold_1940_22
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24468..24851)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GT45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27560.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_1940_23
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25093..25749)
DNA (657bp) protein (219aa)
Transcriptional regulator LuxR family n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H286_9FIRM
Transcriptional regulator LuxR family {ECO:0000313|EMBL:CDB27561.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L3_072_000M1_scaffold_1940_24
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25746..26714)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HNV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27562.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_1940_25
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26707..27615)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GQ73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27563.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
conserved hypothetical protein
L3_072_000M1_scaffold_1940_26
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27575..28084)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GQ73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27563.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
conserved hypothetical protein
L3_072_000M1_scaffold_1940_27
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28481..30052)
DNA (1572bp) protein (524aa)
Repeat protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6VD67_9CLOT
Repeat protein {ECO:0000313|EMBL:CDC80597.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
Listeria/Bacterioides repeat
L3_072_000M1_scaffold_1940_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30085..32427)
DNA (2343bp) protein (781aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E852_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84321.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein predicted by Glimmer/Critica
Displaying 28 items

View Taxonomy