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L3_072_000M1_scaffold_12401

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_12401_1
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..391
DNA (390bp) protein (130aa)
Tetratricopeptide repeat protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBZ5_9CLOT
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EEG31056.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Suppressor of fused protein (SUFU).
L3_072_000M1_scaffold_12401_2
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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407..724
DNA (318bp) protein (106aa)
TPR domain protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6Q9F3_9FIRM
TPR domain protein {ECO:0000313|EMBL:CDC29669.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
hypothetical protein
L3_072_000M1_scaffold_12401_3
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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702..1103
DNA (402bp) protein (134aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QL98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK64298.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_072_000M1_scaffold_12401_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1117..1698
DNA (582bp) protein (194aa)
Uncharacterized protein n=2 Tax=root RepID=C0EBZ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31057.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_072_000M1_scaffold_12401_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1914..2411
DNA (498bp) protein (166aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBZ8_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG31059.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
helix-turn-helix domain-containing protein
L3_072_000M1_scaffold_12401_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2565..3302
DNA (738bp) protein (246aa)
Sigma-70, region 4 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBZ9_9CLOT
Sigma-70, region 4 {ECO:0000313|EMBL:EEG31060.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_072_000M1_scaffold_12401_7
unknown

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comp(3233..3391)
DNA (159bp) protein (53aa)

This feature has no annotations

L3_072_000M1_scaffold_12401_8
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3883..4260
DNA (378bp) protein (126aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
mRNA interferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EC01_9CLOT
Growth inhibitor
L3_072_000M1_scaffold_12401_9
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4253..4495
DNA (243bp) protein (81aa)
DNA binding domain, excisionase family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EC02_9CLOT
DNA binding domain, excisionase family {ECO:0000313|EMBL:EEG31063.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
DNA binding domain, excisionase family
L3_072_000M1_scaffold_12401_10
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4643..5929
DNA (1287bp) protein (429aa)
Site-specific recombinase, phage integrase family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EC03_9CLOT
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEG31064.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Site-specific recombinase XerD
L3_072_000M1_scaffold_12401_11

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6627..7106
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1U1I8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC65386.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
Displaying 11 items

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