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L3_072_000M1_scaffold_395

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_395_1
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(243..2027)
DNA (1785bp) protein (595aa)
Putative septum site-determining protein MinC n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QE13_9FIRM
Putative septum site-determining protein MinC {ECO:0000313|EMBL:CCZ20481.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
fibronectin-binding protein
L3_072_000M1_scaffold_395_2
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2202..3827)
DNA (1626bp) protein (542aa)
Radical SAM domain protein n=1 Tax=Clostridium sp. CAG:167 RepID=R5WC21_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:CCZ90067.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
radical SAM protein
L3_072_000M1_scaffold_395_3
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3909..7133)
DNA (3225bp) protein (1075aa)
Predicted membrane protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q1X0_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCZ20344.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Predicted membrane protein
L3_072_000M1_scaffold_395_4
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7491..7814
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FYY3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE19866.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
L3_072_000M1_scaffold_395_5
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7944..8705)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FYZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE19876.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
hypothetical protein
L3_072_000M1_scaffold_395_6
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8972..10252
DNA (1281bp) protein (427aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Clostridium sp. ASF356 RepID=N1ZTX6_9CLOT
L3_072_000M1_scaffold_395_7
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10302..11036
DNA (735bp) protein (245aa)
fabG1; 3-oxoacyl-[acyl-carrier-protein] reductase FabG (EC:1.1.1.100)
Probable short chain dehydrogenase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q0S1_9FIRM
Probable short chain dehydrogenase {ECO:0000313|EMBL:CCZ19929.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
L3_072_000M1_scaffold_395_8
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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comp(11278..11889)
DNA (612bp) protein (204aa)
hypothetical protein B1040_04020 id=4183086 bin=GWF2_Clostridiales_38_85 species=Gracilibacillus halophilus genus=Gracilibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
L3_072_000M1_scaffold_395_9
unknown

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comp(12122..12802)
DNA (681bp) protein (227aa)

This feature has no annotations

L3_072_000M1_scaffold_395_10
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13031..13567)
DNA (537bp) protein (179aa)
Conserved protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EU02_9FIRM
Conserved protein {ECO:0000313|EMBL:CDE04982.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L3_072_000M1_scaffold_395_11
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13651..14934)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FX88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE19874.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
DNA polymerase-3 alpha subunit
L3_072_000M1_scaffold_395_12
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14956..16917)
DNA (1962bp) protein (654aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q253_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20424.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
hypothetical protein
L3_072_000M1_scaffold_395_13
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16976..18238)
DNA (1263bp) protein (421aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PV62_9FIRM
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:CCZ20425.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
alcohol dehydrogenase, zinc-binding domain-containing protein
L3_072_000M1_scaffold_395_14
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18309..18545)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QDV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20426.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
L3_072_000M1_scaffold_395_15
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18860..21217
DNA (2358bp) protein (786aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
DNA ligase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QH56_9FIRM
Lig; NAD-dependent DNA ligase
L3_072_000M1_scaffold_395_16
unknown

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21406..21765
DNA (360bp) protein (120aa)

This feature has no annotations

L3_072_000M1_scaffold_395_17
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21781..22047)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0ILM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT21584.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
L3_072_000M1_scaffold_395_18
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22350..23636
DNA (1287bp) protein (429aa)
GTPase Obg n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PW29_9FIRM
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
obg; GTPase obg
L3_072_000M1_scaffold_395_19
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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23984..24133
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M8Y1_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
50S ribosomal protein L33
L3_072_000M1_scaffold_395_20
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24179..24424
DNA (246bp) protein (82aa)
Protein translocase subunit SecE n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FZ44_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
Preprotein translocase subunit SecE
L3_072_000M1_scaffold_395_21
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24446..24985
DNA (540bp) protein (180aa)
Transcription termination/antitermination protein NusG n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PTX7_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
transcription antitermination protein nusG
L3_072_000M1_scaffold_395_22
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25086..25511
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PZY3_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
LSU ribosomal protein L11P
L3_072_000M1_scaffold_395_23
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25530..26225
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PSW9_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
rplA; 50S ribosomal protein L1
L3_072_000M1_scaffold_395_24
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(26268..28151)
DNA (1884bp) protein (628aa)
Uncharacterized protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYQ5_MAHA5
hypothetical protein
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
L3_072_000M1_scaffold_395_25
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

28426..32007
DNA (3582bp) protein (1194aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TB62_9FIRM
L3_072_000M1_scaffold_395_26
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32113..32985
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000363808E
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CDM67547.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_072_000M1_scaffold_395_27
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33121..33630)
DNA (510bp) protein (170aa)
DNA-binding helix-turn-helix protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TDH0_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDC71463.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
Cro/CI family transcriptional regulator
L3_072_000M1_scaffold_395_28
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33741..34649)
DNA (909bp) protein (303aa)
Putative N-acetylneuraminate lyase n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B3A6_9CLOT
N-acetylneuraminate lyase {ECO:0000313|EMBL:EGN41420.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
dihydrodipicolinate synthase/N-acetylneuraminate lyase
L3_072_000M1_scaffold_395_29
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34826..35485
DNA (660bp) protein (220aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FRB9_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDE17854.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
D,D-peptidase/D,D-carboxypeptidase
L3_072_000M1_scaffold_395_30
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35845..36945)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FR65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17330.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
hypothetical protein
Displaying items 1-30 of 66 in total

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