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L3_072_000M1_scaffold_1938

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1938_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..777)
DNA (777bp) protein (259aa)
Type I restriction-modification system methyltransferase subunit (EC:2.1.1.72)
Type I restriction-modification system, M subunit n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RSK7_9FIRM
Type I restriction-modification system, M subunit {ECO:0000313|EMBL:EHL71602.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_072_000M1_scaffold_1938_2
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(857..3409)
DNA (2553bp) protein (851aa)
Putative uncharacterized protein n=1 Tax=Finegoldia magna SY403409CC001050417 RepID=F9MXI7_FINMA
Putative uncharacterized protein {ECO:0000313|EMBL:EGS35209.1}; TaxID=866779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna SY403409CC001050417.;"
hypothetical protein
L3_072_000M1_scaffold_1938_3
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3445..5694)
DNA (2250bp) protein (750aa)
Superfamily II helicase n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4DAD1_DESAJ
superfamily II helicase
Superfamily II helicase {ECO:0000313|EMBL:AFM42755.1}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
L3_072_000M1_scaffold_1938_4
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5707..6666)
DNA (960bp) protein (320aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3AY13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81664.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
protein of unknown function (DUF1837)
L3_072_000M1_scaffold_1938_5
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6695..6979)
DNA (285bp) protein (95aa)
Conserved domain protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H183_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDB27729.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_1938_6
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7186..7800
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GTH4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27730.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_072_000M1_scaffold_1938_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8388..9083)
DNA (696bp) protein (232aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS67_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBK95936.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_072_000M1_scaffold_1938_8
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9241..10311
DNA (1071bp) protein (357aa)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BN02_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO82507.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
hypothetical protein
L3_072_000M1_scaffold_1938_9
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10295..12895
DNA (2601bp) protein (867aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CZG2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG55497.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L3_072_000M1_scaffold_1938_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13097..15400
DNA (2304bp) protein (768aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41671.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
alpha-L-rhamnosidase
L3_072_000M1_scaffold_1938_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15415..15990
DNA (576bp) protein (192aa)
Putative FMN-dependent NADH-azoreductase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXA9_9FIRM
Putative FMN-dependent NADH-azoreductase {ECO:0000313|EMBL:CDB41670.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
acpD; acyl carrier protein phosphodiesterase AcpD
L3_072_000M1_scaffold_1938_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16225..18369
DNA (2145bp) protein (715aa)
Ig domain protein group 2 domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I5A8_9FIRM
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:CDB41669.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Ig domain-containing protein
L3_072_000M1_scaffold_1938_13
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18432..19025)
DNA (594bp) protein (198aa)
HDIG domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HUW2_9FIRM
HDIG domain protein {ECO:0000313|EMBL:CDB41668.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
uncharacterized domain HDIG
L3_072_000M1_scaffold_1938_14
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19102..19680)
DNA (579bp) protein (193aa)
Putative transcriptional regulator TetR family n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IUJ8_9FIRM
Putative transcriptional regulator TetR family {ECO:0000313|EMBL:CDB41667.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
TetR family transcriptional regulator
L3_072_000M1_scaffold_1938_15
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20082..21539
DNA (1458bp) protein (486aa)
Putative transporter n=1 Tax=Clostridium sp. CAG:413 RepID=R6NEV0_9CLOT
Putative transporter {ECO:0000313|EMBL:CDC09630.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
transporter
L3_072_000M1_scaffold_1938_16

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21536..24082
DNA (2547bp) protein (849aa)
Putative alfa-L-rhamnosidase n=1 Tax=Clostridium sp. CAG:413 RepID=R6PIP0_9CLOT
Putative alfa-L-rhamnosidase {ECO:0000313|EMBL:AHF25263.1}; TaxID=1393470 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig1604.;"
alpha-L-rhamnosidase
L3_072_000M1_scaffold_1938_17
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24095..24982
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PIP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC13170.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_072_000M1_scaffold_1938_18
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25045..25605)
DNA (561bp) protein (187aa)
Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I5A4_9FIRM
Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family {ECO:0000313|EMBL:CDB41664.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L3_072_000M1_scaffold_1938_19
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25732..26784)
DNA (1053bp) protein (351aa)
Peptidase propeptide and YPEB domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HUV8_9FIRM
Peptidase propeptide and YPEB domain protein {ECO:0000313|EMBL:CDB41663.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
peptidase propeptide and YPEB domain protein
L3_072_000M1_scaffold_1938_20
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27026..28639)
DNA (1614bp) protein (538aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Heavy metal sensor kinase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IUJ3_9FIRM
histidine kinase
L3_072_000M1_scaffold_1938_21
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28626..29291)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41661.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Displaying 21 items

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