ggKbase home page

L3_072_000M1_scaffold_39

Search features with annotation key words

Displaying items 1-30 of 125 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_39_1
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(462..1730)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I714_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42284.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
glycoside hydrolase
L3_072_000M1_scaffold_39_2
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1965..3440
DNA (1476bp) protein (492aa)
Cellulase (Glycosyl hydrolase family 5) n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWL4_9FIRM
Cellulase (Glycosyl hydrolase family 5) {ECO:0000313|EMBL:CDB42283.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
glycoside hydrolase family protein
L3_072_000M1_scaffold_39_3
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3759..4238
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42282.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_072_000M1_scaffold_39_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4295..4837)
DNA (543bp) protein (181aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IA11_9FIRM
L3_072_000M1_scaffold_39_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4975..6225
DNA (1251bp) protein (417aa)
Sulphate transporter n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HYY6_9FIRM
Sulphate transporter {ECO:0000313|EMBL:CDB42280.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
sulfate transporter
L3_072_000M1_scaffold_39_6
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6276..7934)
DNA (1659bp) protein (553aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
phoR; OmpR family two component system phosphate regulon sensor histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I708_9FIRM
L3_072_000M1_scaffold_39_7
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7931..8608)
DNA (678bp) protein (226aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWK8_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDB42278.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_072_000M1_scaffold_39_8
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8895..9848
DNA (954bp) protein (318aa)
Hydrolase alpha/beta domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWB1_9FIRM
Hydrolase alpha/beta domain protein {ECO:0000313|EMBL:CDB42277.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
alpha/beta hydrolase
L3_072_000M1_scaffold_39_9
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10019..11209
DNA (1191bp) protein (397aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IA06_9FIRM
L3_072_000M1_scaffold_39_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11225..11665
DNA (441bp) protein (147aa)
Fe-S iron-sulfur cluster assembly protein NifU family n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HYY4_9FIRM
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CDB42275.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_072_000M1_scaffold_39_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11670..12077
DNA (408bp) protein (136aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I702_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDB42274.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
transcriptional regulator, BadM/Rrf2 family
L3_072_000M1_scaffold_39_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12262..13077)
DNA (816bp) protein (272aa)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Rhamnulose-1-phosphate aldolase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWK2_9FIRM
rhamnulose-1-phosphate aldolase
L3_072_000M1_scaffold_39_13
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13074..14315)
DNA (1242bp) protein (414aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L-rhamnose isomerase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWA6_9FIRM
L-rhamnose isomerase
L3_072_000M1_scaffold_39_14
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14448..15464
DNA (1017bp) protein (339aa)
Peptidase S15 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IA01_9FIRM
Peptidase S15 {ECO:0000313|EMBL:CDB42271.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
peptidase S15
L3_072_000M1_scaffold_39_15
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15583..15903)
DNA (321bp) protein (107aa)
TfoX N-terminal domain-containing protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HYY0_9FIRM
TfoX N-terminal domain-containing protein {ECO:0000313|EMBL:CDB42270.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
TfoX N-terminal domain-containing protein
L3_072_000M1_scaffold_39_16
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15905..17119)
DNA (1215bp) protein (405aa)
Metallophosphoesterase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6Z7_9FIRM
Metallophosphoesterase {ECO:0000313|EMBL:CDB42269.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
metallophosphoesterase
L3_072_000M1_scaffold_39_17
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17351..18517
DNA (1167bp) protein (389aa)
Basic membrane protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWJ6_9FIRM
Basic membrane protein {ECO:0000313|EMBL:CDB42268.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
basic membrane lipoprotein
L3_072_000M1_scaffold_39_18
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18576..19175)
DNA (600bp) protein (200aa)
Manganese containing catalase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWA1_9FIRM
Manganese containing catalase {ECO:0000313|EMBL:CDB42267.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
manganese containing catalase
L3_072_000M1_scaffold_39_19
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19175..19426)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I9Z5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42266.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
spore coat protein CotJB
L3_072_000M1_scaffold_39_20
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19423..19629)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HYX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42265.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_072_000M1_scaffold_39_21
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19758..20423
DNA (666bp) protein (222aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6Z2_9FIRM
L3_072_000M1_scaffold_39_22
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20437..21141
DNA (705bp) protein (235aa)
Purine-nucleoside phosphorylase {ECO:0000256|SAAS:SAAS00035203}; EC=2.4.2.1 {ECO:0000256|SAAS:SAAS00035203};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
deoD; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase DeoD-type n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWJ0_9FIRM
L3_072_000M1_scaffold_39_23
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21156..22334
DNA (1179bp) protein (393aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IW95_9FIRM
L3_072_000M1_scaffold_39_24
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22331..22756
DNA (426bp) protein (142aa)
cdd; cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I9Z1_9FIRM
Cytidine deaminase {ECO:0000313|EMBL:CDB42261.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_072_000M1_scaffold_39_25
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22753..23844
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HYX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42260.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
membrane lipoprotein TmpC
L3_072_000M1_scaffold_39_26
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23854..25155
DNA (1302bp) protein (434aa)
pyn; pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6Y5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42259.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_072_000M1_scaffold_39_27
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25343..27691
DNA (2349bp) protein (783aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWI4_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CDB42258.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
ABC-type multidrug transport system, ATPase and permease components
L3_072_000M1_scaffold_39_28
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27703..28209
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IW89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42257.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_072_000M1_scaffold_39_29
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28264..30450
DNA (2187bp) protein (729aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I9Y5_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CDB42256.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
ABC transporter permease/ATP-binding protein
L3_072_000M1_scaffold_39_30
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30605..31309
DNA (705bp) protein (235aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HYW9_9FIRM
Displaying items 1-30 of 125 in total

View Taxonomy