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L3_072_000M1_scaffold_144

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_144_1
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..181)
DNA (180bp) protein (60aa)
TraG family protein n=1 Tax=Clostridium bolteae 90A9 RepID=R0AMJ6_9CLOT
TraG family protein {ECO:0000313|EMBL:ENZ53410.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
conjugal transfer protein TraG
L3_072_000M1_scaffold_144_2
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(178..654)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90A9 RepID=R0AMQ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ53411.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_072_000M1_scaffold_144_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(760..972)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76280.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_072_000M1_scaffold_144_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(988..2079)
DNA (1092bp) protein (364aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium bolteae 90A9 RepID=R0BXQ8_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ENZ53413.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_072_000M1_scaffold_144_5
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2186..3097
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 3_3_56FAA RepID=G9R7G6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM87621.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
L3_072_000M1_scaffold_144_6
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3119..3580)
DNA (462bp) protein (154aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JIE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN33583.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_072_000M1_scaffold_144_7
Campylobacter showae, Campylobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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comp(3609..6185)
DNA (2577bp) protein (859aa)
Restriction enzyme BcgI alpha chain-like protein {ECO:0000313|EMBL:EKU10395.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EKU10395.1};; TaxID=1244083 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.;" source="Campylobacter showae CSUNSWCD.;"
mod; N-6 DNA methylase (EC:2.1.1.72)
Restriction enzyme BcgI alpha chain-like protein n=1 Tax=Campylobacter showae CSUNSWCD RepID=M5IHU0_9PROT
L3_072_000M1_scaffold_144_8
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6178..6357)
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T337_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN97131.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_072_000M1_scaffold_144_9
unknown

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comp(7061..7159)
DNA (99bp) protein (33aa)

This feature has no annotations

L3_072_000M1_scaffold_144_10
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7185..10892)
DNA (3708bp) protein (1236aa)
Uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VF21_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO57772.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
hypothetical protein
L3_072_000M1_scaffold_144_11
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11033..12079)
DNA (1047bp) protein (349aa)
Fic family protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VF22_9CLOT
Fic family protein {ECO:0000313|EMBL:EDO57773.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
FIC domain-containing protein
L3_072_000M1_scaffold_144_12
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12199..12573)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VF23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO57774.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
hypothetical protein
L3_072_000M1_scaffold_144_13
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12647..15661)
DNA (3015bp) protein (1005aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VF24_9CLOT
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EDO57775.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG
L3_072_000M1_scaffold_144_14
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15780..16622)
DNA (843bp) protein (281aa)
O-methyltransferase domain protein n=1 Tax=Clostridium sp. CAG:264 RepID=R5KLK1_9CLOT
O-methyltransferase domain protein {ECO:0000313|EMBL:CCY61966.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
O-Methyltransferase involved in polyketide biosynthesis
L3_072_000M1_scaffold_144_15
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16696..17331)
DNA (636bp) protein (212aa)
Transcriptional regulator TetR family n=1 Tax=Clostridium sp. CAG:264 RepID=R5K5E2_9CLOT
Transcriptional regulator TetR family {ECO:0000313|EMBL:CCY61965.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
Transcriptional regulator
L3_072_000M1_scaffold_144_16
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17494..18288)
DNA (795bp) protein (265aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium sp. CAG:264 RepID=R5K5J3_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:CCY61963.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
4Fe-4S binding domain.
L3_072_000M1_scaffold_144_17
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18499..19173
DNA (675bp) protein (225aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VF29_9CLOT
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EDO57780.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
CarD family transcriptional regulator
L3_072_000M1_scaffold_144_18
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19389..20234)
DNA (846bp) protein (282aa)
Pyruvate formate-lyase 1-activating enzyme {ECO:0000313|EMBL:EDO57781.1}; EC=1.97.1.4 {ECO:0000313|EMBL:EDO57781.1};; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 1-activating enzyme n=1 Tax=Clostridium sp. L2-50 RepID=A7VF30_9CLOT
L3_072_000M1_scaffold_144_19
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20693..22969)
DNA (2277bp) protein (759aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EDO57783.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EDO57783.1};; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
pflB; pyruvate formate lyase PflB (EC:2.3.1.54)
Formate C-acetyltransferase n=1 Tax=Clostridium sp. L2-50 RepID=A7VF32_9CLOT
L3_072_000M1_scaffold_144_20
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23196..23324
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:264 RepID=R5K5D7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY61960.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
L3_072_000M1_scaffold_144_21
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23591..23848)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HR95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32255.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L3_072_000M1_scaffold_144_22
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24172..24318)
DNA (147bp) protein (49aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VF35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY61959.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
L3_072_000M1_scaffold_144_23
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24355..24774)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:264 RepID=R5K5I9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY61958.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
L3_072_000M1_scaffold_144_24
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24920..25681)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:264 RepID=R5KLX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY61957.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
Predicted membrane protein
L3_072_000M1_scaffold_144_25
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25873..27477)
DNA (1605bp) protein (535aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=2 Tax=Clostridium RepID=A7VF38_9CLOT
L3_072_000M1_scaffold_144_26
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27663..30011)
DNA (2349bp) protein (783aa)
Ferrous iron transport protein B n=1 Tax=Clostridium sp. L2-50 RepID=A7VF39_9CLOT
Ferrous iron transport protein B {ECO:0000313|EMBL:EDO57790.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
ferrous iron transporter FeoB
L3_072_000M1_scaffold_144_27
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30032..30847)
DNA (816bp) protein (272aa)
Cof-like hydrolase n=1 Tax=Clostridium sp. L2-50 RepID=A7VF40_9CLOT
Cof-like hydrolase {ECO:0000313|EMBL:EDO57791.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
hypothetical protein
L3_072_000M1_scaffold_144_28
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30997..31620)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VF41_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO57792.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
type 1 dockerin
L3_072_000M1_scaffold_144_29
unknown

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comp(31637..31813)
DNA (177bp) protein (59aa)

This feature has no annotations

L3_072_000M1_scaffold_144_30
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31764..32495)
DNA (732bp) protein (244aa)
Capsular exopolysaccharide family n=1 Tax=Clostridium sp. L2-50 RepID=A7VF42_9CLOT
Capsular exopolysaccharide family {ECO:0000313|EMBL:EDO57793.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
capsular exopolysaccharide family
Displaying items 1-30 of 85 in total

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