ggKbase home page

L3_072_000M1_scaffold_3926

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_3926_1
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

1..1056
DNA (1056bp) protein (352aa)
Flagellar biosynthesis protein FlhB n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LIG3_9SPIR
Flagellar biosynthesis protein FlhB {ECO:0000313|EMBL:CCY77279.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
flhB; flagellar biosynthesis protein FlhB
L3_072_000M1_scaffold_3926_2
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

1067..3175
DNA (2109bp) protein (703aa)
Type III secretion FHIPEP protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LW77_9SPIR
Type III secretion FHIPEP protein {ECO:0000313|EMBL:CCY77277.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
type III secretion FHIPEP protein
L3_072_000M1_scaffold_3926_3
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

3196..3369
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LW06_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY77276.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
hypothetical protein
L3_072_000M1_scaffold_3926_4
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

3387..5123
DNA (1737bp) protein (579aa)
Flagellar biosynthesis regulator FlhF n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDI7_9SPIR
Flagellar biosynthesis regulator FlhF {ECO:0000313|EMBL:CCY77275.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
flhF; flagellar biosynthesis regulator FlhF
L3_072_000M1_scaffold_3926_5
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

5147..6016
DNA (870bp) protein (290aa)
Site-determining protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LIF9_9SPIR
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
fleN; flagellar synthesis regulator FleN
L3_072_000M1_scaffold_3926_6
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

6026..6703
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDN0_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY77273.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
hypothetical protein
L3_072_000M1_scaffold_3926_7
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

6741..7553
DNA (813bp) protein (271aa)
RNA polymerase sigma factor n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LW72_9SPIR
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
fliA; RNA polymerase sigma factor WhiG
L3_072_000M1_scaffold_3926_8
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

7576..9537
DNA (1962bp) protein (654aa)
Polymerase n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LW02_9SPIR
Polymerase {ECO:0000313|EMBL:CCY77271.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
Polymerase
L3_072_000M1_scaffold_3926_9
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

9524..10507
DNA (984bp) protein (328aa)
NIF3 domain protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDI2_9SPIR
NIF3 domain protein {ECO:0000313|EMBL:CCY77270.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
NIF3 domain-containing protein
L3_072_000M1_scaffold_3926_10
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

10514..11179
DNA (666bp) protein (222aa)
Phosphatase HAD family n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LIF6_9SPIR
Phosphatase HAD family {ECO:0000313|EMBL:CCY77269.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
phosphatase, HAD family
L3_072_000M1_scaffold_3926_11
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(11295..11792)
DNA (498bp) protein (166aa)
DNA repair protein RecO n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LW68_9SPIR
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
DNA repair protein RecO
L3_072_000M1_scaffold_3926_12
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(11888..12055)
DNA (168bp) protein (56aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDH7_9SPIR
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:CCY77265.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
4Fe-4S ferredoxin
L3_072_000M1_scaffold_3926_13
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(12087..12455)
DNA (369bp) protein (123aa)
Iron-dependent repressor n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LW64_9SPIR
Iron-dependent repressor {ECO:0000313|EMBL:CCY77262.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
iron dependend repressor
L3_072_000M1_scaffold_3926_14
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

12586..12681
DNA (96bp) protein (32aa)
Two component transcriptional regulator winged helix family n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDH4_9SPIR
Two component transcriptional regulator winged helix family {ECO:0000313|EMBL:CCY77260.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
winged helix family two component transcriptional regulator
L3_072_000M1_scaffold_3926_15
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

12681..13121
DNA (441bp) protein (147aa)
Two component transcriptional regulator winged helix family n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDH4_9SPIR
Two component transcriptional regulator winged helix family {ECO:0000313|EMBL:CCY77260.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
two component transcriptional regulator, winged helix family
L3_072_000M1_scaffold_3926_16
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

13134..14873
DNA (1740bp) protein (580aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
Signal transduction histidine kinase n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDL2_9SPIR
multi-sensor signal transduction histidine kinase
L3_072_000M1_scaffold_3926_17
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

15018..16157
DNA (1140bp) protein (380aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LVY8_9SPIR
1-deoxy-D-xylulose 5-phosphate reductoisomerase
L3_072_000M1_scaffold_3926_18
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

16512..17147
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LIE3_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY77254.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
hypothetical protein
L3_072_000M1_scaffold_3926_19
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(17457..18368)
DNA (912bp) protein (304aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LW57_9SPIR
queA; S-adenosylmethionine--tR-ribosyltransferase-isomerase
L3_072_000M1_scaffold_3926_20
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(18387..20027)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDG8_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY77250.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
hypothetical protein
L3_072_000M1_scaffold_3926_21
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(20045..20962)
DNA (918bp) protein (306aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
Leader peptidase (Signal peptidase I) n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LW53_9SPIR
leader peptidase/signal peptidase I
L3_072_000M1_scaffold_3926_22
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

21371..22579
DNA (1209bp) protein (403aa)
Protein kinase putative n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDG4_9SPIR
Protein kinase putative {ECO:0000313|EMBL:CCY77245.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
protein kinase
L3_072_000M1_scaffold_3926_23
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists


22618..23865
DNA (1248bp) protein (416aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
Histidine--tRNA ligase n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LDJ5_9SPIR
hisS; Histidyl-tRNA synthetase, class IIa
L3_072_000M1_scaffold_3926_24
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(24317..24994)
DNA (678bp) protein (226aa)
Putative variable surface protein VspH n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LCD9_9SPIR
Putative variable surface protein VspH {ECO:0000313|EMBL:CCY75099.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
Displaying 24 items

View Taxonomy