ggKbase home page

L3_072_000M1_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 277 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_34_1
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(133..831)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RWI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF69513.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
hypothetical protein
L3_072_000M1_scaffold_34_2
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(891..2351)
DNA (1461bp) protein (487aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Butyrivibrio RepID=D4RWJ0_9FIRM
Signal transduction histidine kinase
L3_072_000M1_scaffold_34_3
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2401..3111)
DNA (711bp) protein (237aa)
ABC transporter, ATP-binding protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RWJ1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFF69515.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-)
L3_072_000M1_scaffold_34_4
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3124..3894)
DNA (771bp) protein (257aa)
ABC transporter, ATP-binding protein n=2 Tax=Butyrivibrio RepID=D4RWJ2_9FIRM
High affinity branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY78614.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
ABC transporter
L3_072_000M1_scaffold_34_5
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3897..4982)
DNA (1086bp) protein (362aa)
Branched-chain amino acid ABC transporter, permease protein n=2 Tax=Butyrivibrio RepID=D4RWJ3_9FIRM
High-affinity branched-chain amino acid transport system permeaseprotein BraE {ECO:0000313|EMBL:CCY78613.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
inner-membrane translocator
L3_072_000M1_scaffold_34_6
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4993..5877)
DNA (885bp) protein (295aa)
Branched-chain amino acid ABC transporter, permease protein n=2 Tax=Butyrivibrio RepID=D4RWJ4_9FIRM
High-affinity branched-chain amino acid ABC transporter permease protein LivH {ECO:0000313|EMBL:CCY78612.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
livH; branched-chain amino acid ABC transporter membrane component
L3_072_000M1_scaffold_34_7
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5987..7162)
DNA (1176bp) protein (392aa)
Receptor family ligand-binding protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RWJ5_9FIRM
Receptor family ligand-binding protein {ECO:0000313|EMBL:EFF69519.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
Extracellular ligand-binding receptor
L3_072_000M1_scaffold_34_8
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7247..7915)
DNA (669bp) protein (223aa)
Response regulator receiver domain protein n=2 Tax=Butyrivibrio RepID=D4RWJ6_9FIRM
DNA-binding response regulator ResD {ECO:0000313|EMBL:CCY78610.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
two component system response regulator
L3_072_000M1_scaffold_34_9
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7968..8558)
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Butyrivibrio RepID=D4RWJ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY78609.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
hypothetical protein
L3_072_000M1_scaffold_34_10
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8713..9096)
DNA (384bp) protein (128aa)
Oxidoreductase n=2 Tax=Butyrivibrio RepID=D4RWJ8_9FIRM
Redox-active protein {ECO:0000313|EMBL:CCY78608.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
C_GCAxxG_C_C family probable redox protein
L3_072_000M1_scaffold_34_11
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9100..9945)
DNA (846bp) protein (282aa)
Uncharacterized protein n=2 Tax=Butyrivibrio RepID=D4RWJ9_9FIRM
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
conserved hypothetical protein TIGR00726
L3_072_000M1_scaffold_34_12
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9945..10292)
DNA (348bp) protein (116aa)
UPF0102 protein BUTYVIB_00036 n=2 Tax=Butyrivibrio RepID=D4RWK0_9FIRM
UPF0102 protein BN569_01398 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
conserved hypothetical protein TIGR00252
L3_072_000M1_scaffold_34_13
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10279..10569)
DNA (291bp) protein (97aa)
FlhB domain protein n=2 Tax=Butyrivibrio RepID=R5M046_9FIRM
FlhB domain protein {ECO:0000313|EMBL:CCY78602.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB
L3_072_000M1_scaffold_34_14
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10573..12147)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus CAG:259 RepID=R5LZV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY78601.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
hypothetical protein
L3_072_000M1_scaffold_34_15
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12172..12804)
DNA (633bp) protein (211aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
Ribonuclease HII n=2 Tax=Butyrivibrio RepID=D4RWK3_9FIRM
rnhB; ribonuclease HII
L3_072_000M1_scaffold_34_16
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12801..13670)
DNA (870bp) protein (290aa)
Ribosome biogenesis GTPase A n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RWK4_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
ribosome biogenesis GTP-binding protein YlqF
L3_072_000M1_scaffold_34_17
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13657..14259)
DNA (603bp) protein (201aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
Signal peptidase I n=2 Tax=Butyrivibrio RepID=D4RWK5_9FIRM
signal peptidase I
L3_072_000M1_scaffold_34_18
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14345..14692)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=2 Tax=Butyrivibrio RepID=D4RWK6_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
ribosomal protein L19, bacterial type
L3_072_000M1_scaffold_34_19
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14808..16019)
DNA (1212bp) protein (404aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
pncB; nicotinate phosphoribosyltransferase PncB (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=2 Tax=Butyrivibrio RepID=D4RWK7_9FIRM
L3_072_000M1_scaffold_34_20
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16039..16590)
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Butyrivibrio RepID=D4RWK8_9FIRM
Amidase {ECO:0000313|EMBL:CCY78545.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
Amidases related to nicotinamidase
L3_072_000M1_scaffold_34_21
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16587..17426)
DNA (840bp) protein (280aa)
Hydrolase, NUDIX family n=2 Tax=Butyrivibrio RepID=D4RWK9_9FIRM
MutT/NUDIX family protein {ECO:0000313|EMBL:CCY78544.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
MutT/NUDIX family protein
L3_072_000M1_scaffold_34_22
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17519..18259)
DNA (741bp) protein (247aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Butyrivibrio RepID=D4RWL0_9FIRM
tRNA (guanine-N1)-methyltransferase
L3_072_000M1_scaffold_34_23
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18256..18768)
DNA (513bp) protein (171aa)
Ribosome maturation factor RimM n=2 Tax=Butyrivibrio RepID=D4RWL1_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
rimM; 16S rRNA-processing protein RimM
L3_072_000M1_scaffold_34_24
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18821..19048)
DNA (228bp) protein (76aa)
UPF0109 protein BUTYVIB_00048 n=2 Tax=Butyrivibrio RepID=D4RWL2_9FIRM
UPF0109 protein BUTYVIB_00048 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
RNA-binding protein (KH domain)
L3_072_000M1_scaffold_34_25
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19083..19328)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=2 Tax=Butyrivibrio RepID=D4RWL3_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
rpsP; 30S ribosomal protein S16
L3_072_000M1_scaffold_34_26
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19370..20716)
DNA (1347bp) protein (449aa)
Signal recognition particle protein n=2 Tax=Butyrivibrio RepID=D4RWL4_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
signal recognition particle, subunit SRP54
L3_072_000M1_scaffold_34_27
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20728..21072)
DNA (345bp) protein (115aa)
UPF0122 protein BUTYVIB_00051 n=2 Tax=Butyrivibrio RepID=D4RWL5_9FIRM
UPF0122 protein BN569_01383 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
hypothetical protein
L3_072_000M1_scaffold_34_28
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21166..21807)
DNA (642bp) protein (214aa)
TrkA N-terminal domain protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RWL6_9FIRM
TrkA N-terminal domain protein {ECO:0000313|EMBL:EFF69540.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
K+ transport systems, NAD-binding component
L3_072_000M1_scaffold_34_29
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21826..23175)
DNA (1350bp) protein (450aa)
TrkH family potassium uptake protein (EC:3.6.3.14)
Potassium uptake protein KtrB n=1 Tax=Butyrivibrio crossotus CAG:259 RepID=R5LZR0_9FIRM
Potassium uptake protein KtrB {ECO:0000313|EMBL:CCY78536.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
L3_072_000M1_scaffold_34_30
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23193..24413)
DNA (1221bp) protein (407aa)
Threonine ammonia-lyase {ECO:0000313|EMBL:EFF69542.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EFF69542.1};; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
Threonine ammonia-lyase n=2 Tax=Butyrivibrio RepID=D4RWL8_9FIRM
threonine dehydratase
Displaying items 1-30 of 277 in total

View Taxonomy