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L3_072_000M1_scaffold_3235

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_3235_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(364..1305)
DNA (942bp) protein (314aa)
Glycyl-radical enzyme activating protein family protein {ECO:0000313|EMBL:EEC89462.1}; EC=1.97.1.- {ECO:0000313|EMBL:EEC89462.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glycyl-radical enzyme activating protein family (EC:1.97.1.4)
Glycyl-radical enzyme activating protein family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCP1_9FIRM
L3_072_000M1_scaffold_3235_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1268..3574)
DNA (2307bp) protein (769aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EEC89463.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EEC89463.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Formate C-acetyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCP2_9FIRM
pyruvate formate-lyase
L3_072_000M1_scaffold_3235_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3639..4142)
DNA (504bp) protein (168aa)
Transcriptional regulator, DeoR family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCP3_9FIRM
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EEC89464.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Transcriptional regulators of sugar metabolism
L3_072_000M1_scaffold_3235_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4139..4249)
DNA (111bp) protein (37aa)
Transcriptional regulator, DeoR family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCP3_9FIRM
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EEC89464.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_3235_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4315..5616
DNA (1302bp) protein (434aa)
Transporter n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCP4_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
sodium:neurotransmitter symporter
L3_072_000M1_scaffold_3235_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5576..6121)
DNA (546bp) protein (182aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Phosphodiesterase family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCP5_9FIRM
phosphoesterase, MJ0936 family
L3_072_000M1_scaffold_3235_7
Firmicutes bacterium CAG:536, Firmicutes, Bacteria

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comp(6167..7816)
DNA (1650bp) protein (550aa)
pyrophosphate-dependent phosphofructokinase (EC:2.7.1.90)
Diphosphate--fructose-6-phosphate 1-phosphotransferase n=1 Tax=Firmicutes bacterium CAG:536 RepID=R5ZKT5_9FIRM
Diphosphate--fructose-6-phosphate 1-phosphotransferase {ECO:0000313|EMBL:CDA34851.1}; TaxID=1263028 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:536.;"
L3_072_000M1_scaffold_3235_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7905..8558)
DNA (654bp) protein (218aa)
Chloramphenicol O-acetyltransferase {ECO:0000313|EMBL:EEC89460.1}; EC=2.3.1.28 {ECO:0000313|EMBL:EEC89460.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Chloramphenicol O-acetyltransferase (EC:2.3.1.28)
Chloramphenicol O-acetyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCP8_9FIRM
L3_072_000M1_scaffold_3235_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8567..9430)
DNA (864bp) protein (288aa)
Putative membrane protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCP9_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EEC89461.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_3235_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(9497..9949)
DNA (453bp) protein (151aa)
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:EEC89447.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EEC89447.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Peroxiredoxin (EC:1.11.1.15)
Antioxidant, AhpC/TSA family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ0_9FIRM
L3_072_000M1_scaffold_3235_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10506..11726)
DNA (1221bp) protein (407aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EEC89448.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEC89448.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ1_9FIRM
23S rRNA (uracil-5-)-methyltransferase RumA
L3_072_000M1_scaffold_3235_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(11716..12309)
DNA (594bp) protein (198aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ2_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EEC89449.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_072_000M1_scaffold_3235_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12374..12784
DNA (411bp) protein (137aa)
Peptide deformylase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ3_9FIRM
Peptide deformylase {ECO:0000256|RuleBase:RU003335, ECO:0000256|SAAS:SAAS00013131}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
peptide deformylase
L3_072_000M1_scaffold_3235_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12809..14917)
DNA (2109bp) protein (703aa)
amino acid-binding domain sensor hybrid histidine kinase (EC:2.7.13.3)
Response regulator receiver domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ4_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEC89451.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_3235_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14985..16892)
DNA (1908bp) protein (636aa)
Chaperone protein HtpG n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ5_9FIRM
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
molecular chaperone
Displaying 15 items

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