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L3_072_000M1_scaffold_1017

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1017_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(229..879)
DNA (651bp) protein (217aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA11_9FIRM
L3_072_000M1_scaffold_1017_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(899..2194)
DNA (1296bp) protein (432aa)
Protein translocase subunit SecY n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA12_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
protein translocase subunit secY/sec61 alpha
L3_072_000M1_scaffold_1017_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(2196..2633)
DNA (438bp) protein (146aa)
50S ribosomal protein L15 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA13_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L15P
L3_072_000M1_scaffold_1017_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(2649..3158)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA14_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S5P
L3_072_000M1_scaffold_1017_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(3170..3526)
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA15_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L18P
L3_072_000M1_scaffold_1017_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(3548..4093)
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA16_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L6P
L3_072_000M1_scaffold_1017_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(4119..4514)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA17_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S8P
L3_072_000M1_scaffold_1017_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(4530..4715)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA18_9FIRM
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S14P
L3_072_000M1_scaffold_1017_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(4729..5268)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA19_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L5P
L3_072_000M1_scaffold_1017_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(5280..5600)
DNA (321bp) protein (107aa)
50S ribosomal protein L24 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA20_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
rplX; 50S ribosomal protein L24
L3_072_000M1_scaffold_1017_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(5614..5982)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA21_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L14P
L3_072_000M1_scaffold_1017_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(6001..6258)
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA22_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S17P
L3_072_000M1_scaffold_1017_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(6273..6473)
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA23_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L29P
L3_072_000M1_scaffold_1017_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(6473..6889)
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA24_9FIRM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L16P
L3_072_000M1_scaffold_1017_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(6889..7701)
DNA (813bp) protein (271aa)
30S ribosomal protein S3 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA25_9FIRM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S3P
L3_072_000M1_scaffold_1017_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(7712..8047)
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA26_9FIRM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L22P
L3_072_000M1_scaffold_1017_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(8062..8337)
DNA (276bp) protein (92aa)
30S ribosomal protein S19 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA27_9FIRM
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S19P
L3_072_000M1_scaffold_1017_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(8356..9189)
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA28_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L2P
L3_072_000M1_scaffold_1017_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(9248..9541)
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA29_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L23P
L3_072_000M1_scaffold_1017_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(9541..10170)
DNA (630bp) protein (210aa)
50S ribosomal protein L4 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA30_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L4P
L3_072_000M1_scaffold_1017_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(10170..10862)
DNA (693bp) protein (231aa)
50S ribosomal protein L3 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA31_9FIRM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L3P
L3_072_000M1_scaffold_1017_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(10877..11188)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA32_9FIRM
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S10P
L3_072_000M1_scaffold_1017_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11522..12385)
DNA (864bp) protein (288aa)
Proline iminopeptidase {ECO:0000256|PIRNR:PIRNR005539}; Short=PIP {ECO:0000256|PIRNR:PIRNR005539};; EC=3.4.11.5 {ECO:0000256|PIRNR:PIRNR005539};; Prolyl aminopeptidase {ECO:0000256|PIRNR:PIRNR005539}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
pip; prolyl aminopeptidase (EC:3.4.11.5)
Proline iminopeptidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA33_9FIRM
L3_072_000M1_scaffold_1017_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12391..12825)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90391.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
site-specific recombinase like
L3_072_000M1_scaffold_1017_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12827..13615)
DNA (789bp) protein (263aa)
Glycosyl hydrolase family 25 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA35_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:EEC90392.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glycoside hydrolase family protein
L3_072_000M1_scaffold_1017_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13612..14499)
DNA (888bp) protein (296aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA36_9FIRM
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EEC90393.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted dehydrogenases and related proteins
L3_072_000M1_scaffold_1017_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14636..15775)
DNA (1140bp) protein (380aa)
GDSL-like protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA37_9FIRM
GDSL-like protein {ECO:0000313|EMBL:EEC90394.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
lipolytic protein G-D-S-L family
L3_072_000M1_scaffold_1017_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15913..16677
DNA (765bp) protein (255aa)
Methyltransferase domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA38_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:EEC90395.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
cheV2; chemotaxis protein CheV
L3_072_000M1_scaffold_1017_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16700..16855)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90396.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1017_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17203..18543
DNA (1341bp) protein (447aa)
Magnesium transporter n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA40_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Mg2+ transporter (mgtE)
Displaying items 1-30 of 39 in total

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