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L3_072_000M1_scaffold_1306

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1306_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(145..924)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB84_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89959.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_1306_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1013..2773)
DNA (1761bp) protein (587aa)
Oligoendopeptidase, pepF/M3 family {ECO:0000313|EMBL:EEC89960.1}; EC=3.4.24.- {ECO:0000313|EMBL:EEC89960.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Oligoendopeptidase, pepF/M3 family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB85_9FIRM
pepF/M3 family oligoendopeptidase
L3_072_000M1_scaffold_1306_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2834..3574)
DNA (741bp) protein (247aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB86_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEC89961.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
polar amino acid ABC transporter ATP-binding protein
L3_072_000M1_scaffold_1306_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3561..5090)
DNA (1530bp) protein (510aa)
ABC transporter, permease protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB87_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEC89962.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ABC transporter permease
L3_072_000M1_scaffold_1306_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5393..6349)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89963.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1306_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6444..6836)
DNA (393bp) protein (131aa)
Hydrogenase expression/synthesis hypA family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB89_9FIRM
Hydrogenase expression/synthesis hypA family {ECO:0000313|EMBL:EEC89964.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hydrogenase nickel incorporation protein HypA
L3_072_000M1_scaffold_1306_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6790..9471)
DNA (2682bp) protein (894aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB90_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EEC89965.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
NADPH-dependent glutamate synthase GltA2
L3_072_000M1_scaffold_1306_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9473..10135)
DNA (663bp) protein (221aa)
Hydrogenase accessory protein HypB n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB91_9FIRM
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:EEC89966.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypB1; hydrogenase accessory protein HypB1
L3_072_000M1_scaffold_1306_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10269..11048
DNA (780bp) protein (260aa)
Hydrolase, carbon-nitrogen family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB92_9FIRM
Hydrolase, carbon-nitrogen family {ECO:0000313|EMBL:EEC89967.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted amidohydrolase
L3_072_000M1_scaffold_1306_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11026..11994
DNA (969bp) protein (323aa)
Peptidase family T4 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB93_9FIRM
Peptidase family T4 {ECO:0000313|EMBL:EEC89968.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DmpA2; L-aminopeptidase/D-esterase
L3_072_000M1_scaffold_1306_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12092..12787)
DNA (696bp) protein (232aa)
4Fe-4S binding domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB94_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEC89969.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
4Fe-4S binding domain.
L3_072_000M1_scaffold_1306_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12872..13426
DNA (555bp) protein (185aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB95_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EEC89970.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1306_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13419..14210)
DNA (792bp) protein (264aa)
Histidinol phosphatase and related hydrolases of the PHP family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB96_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EEC89971.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_1306_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14207..14635)
DNA (429bp) protein (143aa)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB97_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EEC89972.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
protein tyrosine phosphatase
L3_072_000M1_scaffold_1306_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14803..15615)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BWB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19438.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Site-specific recombinase XerD
L3_072_000M1_scaffold_1306_16
unknown

Not on your lists

16542..16658
DNA (117bp) protein (39aa)

This feature has no annotations

L3_072_000M1_scaffold_1306_17
Veillonella sp. CAG:933, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16744..17409
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Veillonella sp. CAG:933 RepID=R5BMK7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCX56743.1}; TaxID=1262980 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; environmental samples.;" source="Veillonella sp. CAG:933.;"
L3_072_000M1_scaffold_1306_18
Selenomonas sp. FOBRC9, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

17451..17936
DNA (486bp) protein (162aa)
AAA domain protein n=1 Tax=Selenomonas sp. FOBRC9 RepID=J5HUN8_9FIRM
AAA domain protein {ECO:0000313|EMBL:EJP32010.1}; TaxID=936573 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. FOBRC9.;"
hypothetical protein
L3_072_000M1_scaffold_1306_19
Veillonella sp. CAG:933, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

17924..18103
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Veillonella sp. CAG:933 RepID=R5BMK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX56743.1}; TaxID=1262980 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; environmental samples.;" source="Veillonella sp. CAG:933.;"
hypothetical protein
L3_072_000M1_scaffold_1306_20
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18124..18327
DNA (204bp) protein (68aa)
XRE family transcriptional regulator n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X0D1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGP75146.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
transcriptional regulator
L3_072_000M1_scaffold_1306_21
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

18330..18869
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Selenomonadales RepID=G4Q8V5_ACIIR
alkA; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ22538.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L3_072_000M1_scaffold_1306_22
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

18999..20654
DNA (1656bp) protein (552aa)
Type II restriction endonuclease, Alw26I/Eco31I/Esp3I family {ECO:0000313|EMBL:EEA91373.1}; EC=3.1.21.4 {ECO:0000313|EMBL:EEA91373.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Type II restriction endonuclease, Alw26I/Eco31I/Esp3I family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8M4_9ACTN
hypothetical protein
L3_072_000M1_scaffold_1306_23
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20700..23522)
DNA (2823bp) protein (941aa)
DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37)
M2.BsaI n=1 Tax=Ruminococcus torques CAG:61 RepID=R5QE53_9FIRM
M2.BsaI {ECO:0000313|EMBL:CCZ26873.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_072_000M1_scaffold_1306_24
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23547..23741)
DNA (195bp) protein (65aa)
Putative AlpA family transcriptional regulator n=1 Tax=Ruminococcus torques CAG:61 RepID=R5R1H5_9FIRM
Putative AlpA family transcriptional regulator {ECO:0000313|EMBL:CCZ26872.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
putative AlpA family transcriptional regulator
L3_072_000M1_scaffold_1306_25
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

comp(23972..24112)
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VGY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91496.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
L3_072_000M1_scaffold_1306_26
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24456..24692)
DNA (237bp) protein (79aa)
DNA binding domain, excisionase family n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4S219_9FIRM
DNA binding domain, excisionase family {ECO:0000313|EMBL:EFF67721.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
Excisionase from transposon Tn916.
L3_072_000M1_scaffold_1306_27
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24868..25059)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4S220_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF67722.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
Displaying 27 items

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