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L3_072_000M1_scaffold_1386

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1386_1
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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comp(72..701)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:308 RepID=R7A6I3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD51084.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
hypothetical protein
L3_072_000M1_scaffold_1386_2
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(769..2205)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:308 RepID=R6ZRF0_9FIRM
Glycosyl hydrolase, family 1 {ECO:0000313|EMBL:ERK42166.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
glycoside hydrolase
L3_072_000M1_scaffold_1386_3
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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comp(2264..2605)
DNA (342bp) protein (114aa)
Phosphotransferase system cellobiose-specific component IIA (EC:2.7.1.69)
Putative cellobiose phosphotransferase system IIA component n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2NVS9_9FIRM
Phosphotransferase system cellobiose-specific component IIA {ECO:0000313|EMBL:CDD51077.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
L3_072_000M1_scaffold_1386_4
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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comp(2630..3877)
DNA (1248bp) protein (416aa)
Phosphotransferase system cellobiose-specific component IIC n=2 Tax=Firmicutes RepID=D4JG81_9FIRM
Phosphotransferase system cellobiose-specific component IIC
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
L3_072_000M1_scaffold_1386_5
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3911..4225)
DNA (315bp) protein (105aa)
Phosphotransferase system cellobiose-specific component IIB (EC:2.7.1.69)
PTS system, Lactose/Cellobiose specific IIB subunit n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SHU8_9FIRM
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EFP62916.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
L3_072_000M1_scaffold_1386_6
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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4400..6373
DNA (1974bp) protein (658aa)
transcriptional antiterminator BglG (EC:2.7.1.69)
Transcriptional antiterminator n=1 Tax=Firmicutes bacterium CAG:308 RepID=R7AX16_9FIRM
Transcriptional antiterminator {ECO:0000313|EMBL:CDD51072.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
L3_072_000M1_scaffold_1386_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(6526..8070)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89935.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_1386_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8154..8972
DNA (819bp) protein (273aa)
Helicase C-terminal domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBB6_9FIRM
Helicase C-terminal domain protein {ECO:0000313|EMBL:EEC89937.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA or RNA helicases of superfamily II
L3_072_000M1_scaffold_1386_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8972..11011
DNA (2040bp) protein (680aa)
Helicase C-terminal domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBB6_9FIRM
Helicase C-terminal domain protein {ECO:0000313|EMBL:EEC89937.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1386_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11016..11402
DNA (387bp) protein (129aa)
Mutator mutT protein {ECO:0000313|EMBL:EEC89939.1}; EC=3.6.1.- {ECO:0000313|EMBL:EEC89939.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ADP-ribose pyrophosphatase (EC:3.6.1.-)
Mutator mutT protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBB8_9FIRM
L3_072_000M1_scaffold_1386_11
unknown

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comp(12464..12610)
DNA (147bp) protein (49aa)

This feature has no annotations

L3_072_000M1_scaffold_1386_12
unknown

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comp(12884..13051)
DNA (168bp) protein (56aa)

This feature has no annotations

L3_072_000M1_scaffold_1386_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13150..13305)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89941.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_1386_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(13385..16093)
DNA (2709bp) protein (903aa)
Copper-exporting ATPase {ECO:0000313|EMBL:EEC89942.1}; EC=3.6.3.4 {ECO:0000313|EMBL:EEC89942.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Copper-exporting ATPase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBC1_9FIRM
heavy metal translocating P-type ATPase
L3_072_000M1_scaffold_1386_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(16103..16396)
DNA (294bp) protein (98aa)
Copper-sensing transcriptional repressor CsoR n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBC2_9FIRM
Copper-sensing transcriptional repressor CsoR {ECO:0000313|EMBL:EEC89943.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
csoR; Possible Copper-sensing transcriptional repressor CsoR
L3_072_000M1_scaffold_1386_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16485..16862
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89944.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_1386_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(17033..17764)
DNA (732bp) protein (244aa)
Response regulator receiver domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBC4_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEC89945.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_072_000M1_scaffold_1386_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17757..19610)
DNA (1854bp) protein (618aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBC5_9FIRM
hypothetical protein
L3_072_000M1_scaffold_1386_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

19756..21093
DNA (1338bp) protein (446aa)
Potassium uptake protein, TrkH family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBC6_9FIRM
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:EEC89947.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ktrB; Ktr system potassium uptake protein KtrB
L3_072_000M1_scaffold_1386_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

21104..21751
DNA (648bp) protein (216aa)
TrkA N-terminal domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBC7_9FIRM
TrkA N-terminal domain protein {ECO:0000313|EMBL:EEC89948.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
K+ transport systems, NAD-binding component
L3_072_000M1_scaffold_1386_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22005..22358
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89949.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1386_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(22518..23534)
DNA (1017bp) protein (339aa)
Dehydrogenase, FMN-dependent n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CBD0_9FIRM
Dehydrogenase, FMN-dependent {ECO:0000313|EMBL:EEC89951.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
L3_072_000M1_scaffold_1386_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(23644..24477)
DNA (834bp) protein (278aa)
Reverse transcriptase (RNA-dependent DNA polymerase) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CEC9_9FIRM
Reverse transcriptase (RNA-dependent DNA polymerase) {ECO:0000313|EMBL:EEC88879.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
RNA-directed DNA polymerase
Displaying 23 items

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