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L3_072_000M1_scaffold_1620

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1620_1
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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2..109
DNA (108bp) protein (36aa)
50S ribosomal protein L17 n=2 Tax=[Streptococcus] pleomorphus RepID=UPI0003B34A90
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
LSU ribosomal protein L17P
L3_072_000M1_scaffold_1620_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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151..720
DNA (570bp) protein (190aa)
O-methyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S7_9FIRM
O-methyltransferase {ECO:0000313|EMBL:EEC90517.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted O-methyltransferase
L3_072_000M1_scaffold_1620_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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723..1175
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90516.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1620_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1242..2060
DNA (819bp) protein (273aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S5_9FIRM
ABC-type cobalt transport system, ATPase component
L3_072_000M1_scaffold_1620_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2045..2905
DNA (861bp) protein (287aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S4_9FIRM
ABC-type cobalt transport system, ATPase component
L3_072_000M1_scaffold_1620_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2898..3695
DNA (798bp) protein (266aa)
Cobalt transport protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S3_9FIRM
Cobalt transport protein {ECO:0000313|EMBL:EEC90513.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_072_000M1_scaffold_1620_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3692..4435
DNA (744bp) protein (248aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S2_9FIRM
L3_072_000M1_scaffold_1620_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4422..5246
DNA (825bp) protein (275aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S1_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EEC90511.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_1620_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5364..5801
DNA (438bp) protein (146aa)
50S ribosomal protein L13 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S0_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L13P
L3_072_000M1_scaffold_1620_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


5815..6216
DNA (402bp) protein (134aa)
30S ribosomal protein S9 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9R9_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S9P
L3_072_000M1_scaffold_1620_11
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6365..6556)
DNA (192bp) protein (64aa)
Phage integrase family protein n=2 Tax=Butyrivibrio RepID=E0S0Q3_BUTPB
phage integrase
Phage integrase family protein {ECO:0000313|EMBL:ADL33378.1}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L3_072_000M1_scaffold_1620_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6522..6674)
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9R8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90508.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1620_13
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6803..7660
DNA (858bp) protein (286aa)
Transcriptional regulator, RpiR family n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SMS8_9FIRM
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EFP61167.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
Transcriptional regulators
L3_072_000M1_scaffold_1620_14
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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7797..9191
DNA (1395bp) protein (465aa)
alpha-galactosidase (EC:3.2.1.86)
diacetylchitobiose-6-phosphate hydrolase n=1 Tax=[Streptococcus] pleomorphus RepID=UPI0003B6E014
Uncharacterized protein {ECO:0000313|EMBL:CDD49605.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
L3_072_000M1_scaffold_1620_15
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

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9181..9411
DNA (231bp) protein (77aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
aldose 1-epimerase (EC:5.1.3.3)
aldose 1-epimerase n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B6E535
L3_072_000M1_scaffold_1620_16
Oceanobacillus oncorhynchi, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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9411..9791
DNA (381bp) protein (127aa)
Glucose-specific enzyme IIA component of PTS n=1 Tax=Clostridium ultunense Esp RepID=M1ZH09_9CLOT
Glucose-specific phosphotransferase enzyme IIA component {ECO:0000313|EMBL:CEI82237.1}; TaxID=545501 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.;" source="Oceanobacillus oncorhynchi.;"
PTS system, glucose subfamily subunit IIA
L3_072_000M1_scaffold_1620_17
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

9788..9877
DNA (90bp) protein (30aa)
EIIBCA-Bgl {ECO:0000313|EMBL:CRH82053.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
L3_072_000M1_scaffold_1620_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10002..10856)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Q2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90492.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1620_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10911..11765)
DNA (855bp) protein (285aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:EEC90491.1}; EC=1.3.1.12 {ECO:0000313|EMBL:EEC90491.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Q1_9FIRM
L3_072_000M1_scaffold_1620_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11762..13024)
DNA (1263bp) protein (421aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Q0_9FIRM
L3_072_000M1_scaffold_1620_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13021..14130)
DNA (1110bp) protein (370aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9P9_9FIRM
L3_072_000M1_scaffold_1620_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14120..15133)
DNA (1014bp) protein (338aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9P8_9FIRM
L3_072_000M1_scaffold_1620_23
Treponema denticola, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

15216..15824
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Treponema denticola ATCC 33520 RepID=M2CDM3_TREDN
Uncharacterized protein {ECO:0000313|EMBL:EMB29203.1}; TaxID=999431 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema denticola H1-T.;"
hypothetical protein
L3_072_000M1_scaffold_1620_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15819..16346)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9P6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90486.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1620_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16362..16955)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9P5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90485.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1620_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17027..17995)
DNA (969bp) protein (323aa)
Kinase domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9P4_9FIRM
Kinase domain protein {ECO:0000313|EMBL:EEC90484.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
serine/threonine protein kinase
L3_072_000M1_scaffold_1620_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18029..18442
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9P3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90483.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_1620_28
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18459..19241)
DNA (783bp) protein (261aa)
ArsR family transcriptional regulator n=1 Tax=[Streptococcus] pleomorphus RepID=UPI0003B3428C
Uncharacterized protein {ECO:0000313|EMBL:EHO24294.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
transcriptional regulator, DeoR family
L3_072_000M1_scaffold_1620_29
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19238..20020)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=[Streptococcus] pleomorphus RepID=UPI0003B3705B
Uncharacterized protein {ECO:0000313|EMBL:KGJ53864.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
L3_072_000M1_scaffold_1620_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20231..21334
DNA (1104bp) protein (368aa)
L-ascorbate 6-phosphate lactonase (EC:3.1.1.-)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B4Q8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76931.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Displaying items 1-30 of 31 in total

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