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L3_072_000M1_scaffold_524

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_524_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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163..1437
DNA (1275bp) protein (425aa)
Citrate (Si)-synthase {ECO:0000313|EMBL:EEC91339.1}; EC=2.3.3.1 {ECO:0000313|EMBL:EEC91339.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Citrate synthase (EC:2.3.3.5 2.3.3.1)
Citrate (Si)-synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A2_9FIRM
L3_072_000M1_scaffold_524_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1434..2429
DNA (996bp) protein (332aa)
Isocitrate/isopropylmalate dehydrogenase (EC:1.1.1.41)
Putative isocitrate dehydrogenase, NAD-dependent n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A1_9FIRM
Putative isocitrate dehydrogenase, NAD-dependent {ECO:0000313|EMBL:EEC91338.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_524_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2447..2704)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91337.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_524_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2781..4157)
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C799_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91336.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Histone H1-like nucleoprotein HC2
L3_072_000M1_scaffold_524_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4313..5437
DNA (1125bp) protein (375aa)
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain (EC:1.3.1.74)
Trypsin n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C798_9FIRM
Trypsin {ECO:0000313|EMBL:EEC91383.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_524_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5512..6471
DNA (960bp) protein (320aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L-lactate dehydrogenase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C797_9FIRM
L-lactate dehydrogenase
L3_072_000M1_scaffold_524_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6486..7232)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C796_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91381.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
metallophosphatase
L3_072_000M1_scaffold_524_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7678..9414
DNA (1737bp) protein (579aa)
Carbon starvation protein CstA n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C795_9FIRM
Carbon starvation protein CstA {ECO:0000313|EMBL:EEC91380.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_524_9
unknown

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9608..9760
DNA (153bp) protein (51aa)

This feature has no annotations

L3_072_000M1_scaffold_524_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9841..11466)
DNA (1626bp) protein (542aa)
DAK2 domain fusion protein YloV n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C794_9FIRM
DAK2 domain fusion protein YloV {ECO:0000313|EMBL:EEC91379.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
yloV; DAK2 domain-containing protein YloV
L3_072_000M1_scaffold_524_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11477..11836)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C793_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91378.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
alkaline shock protein
L3_072_000M1_scaffold_524_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11892..12815)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C792_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91377.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_524_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12869..13768)
DNA (900bp) protein (300aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C791_9FIRM
L3_072_000M1_scaffold_524_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13770..14852)
DNA (1083bp) protein (361aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C790_9FIRM
L3_072_000M1_scaffold_524_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14882..15631)
DNA (750bp) protein (250aa)
Sortase, SrtB family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C789_9FIRM
Sortase, SrtB family {ECO:0000313|EMBL:EEC91374.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
sortase, SrtB family
L3_072_000M1_scaffold_524_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15701..16420)
DNA (720bp) protein (240aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C788_9FIRM
L3_072_000M1_scaffold_524_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16610..17935
DNA (1326bp) protein (442aa)
Tagatose-6-phosphate kinase {ECO:0000313|EMBL:EEC91372.1}; EC=2.7.1.144 {ECO:0000313|EMBL:EEC91372.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Tagatose-6-phosphate kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C787_9FIRM
D-tagatose-bisphosphate aldolase class II accessory protein AgaZ
L3_072_000M1_scaffold_524_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17998..18546)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C786_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91371.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_524_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18556..19137)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C785_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91370.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_524_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19283..20158)
DNA (876bp) protein (292aa)
PTS system mannose/fructose/sorbose family IID component n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C784_9FIRM
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EEC91369.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
PTS system transporter subunit IID
L3_072_000M1_scaffold_524_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20148..20939)
DNA (792bp) protein (264aa)
PTS system sorbose-specific iic component n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C783_9FIRM
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EEC91368.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
PTS system sorbose-specific transporter subunit IIC
L3_072_000M1_scaffold_524_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20963..21439)
DNA (477bp) protein (159aa)
PTS system, mannose/fructose/sorbose family, IIB component {ECO:0000313|EMBL:EEC91367.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EEC91367.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
PTS system, mannose/fructose/sorbose family, IIB component n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C782_9FIRM
agaB; PTS system N-acetylgalactosamine-specific IIB component
L3_072_000M1_scaffold_524_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21678..22844)
DNA (1167bp) protein (389aa)
Amidohydrolase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C781_9FIRM
Amidohydrolase {ECO:0000313|EMBL:EEC91366.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
amidohydrolase
L3_072_000M1_scaffold_524_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22942..23373)
DNA (432bp) protein (144aa)
Phosphotransferase system, mannose/fructose-specific component IIA (EC:2.7.1.69)
PTS system fructose IIA component n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C780_9FIRM
PTS system fructose IIA component {ECO:0000313|EMBL:EEC91365.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_524_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23410..24588)
DNA (1179bp) protein (393aa)
galactosamine 6-phosphate isomerase AgaS (EC:5.-.-.-)
Sugar isomerase, AgaS family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C779_9FIRM
Sugar isomerase, AgaS family {ECO:0000313|EMBL:EEC91364.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_524_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24728..25579)
DNA (852bp) protein (284aa)
Aldose 1-epimerase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C778_9FIRM
Aldose 1-epimerase {ECO:0000313|EMBL:EEC91363.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
galactose mutarotase related enzyme
L3_072_000M1_scaffold_524_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(25603..26361)
DNA (759bp) protein (253aa)
Cof-like hydrolase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C777_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EEC91362.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
HAD-superfamily hydrolase, subfamily IIB
L3_072_000M1_scaffold_524_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26576..27421)
DNA (846bp) protein (282aa)
Phospholipase, patatin family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C776_9FIRM
Phospholipase, patatin family {ECO:0000313|EMBL:EEC91361.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
patatin
L3_072_000M1_scaffold_524_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(27414..28577)
DNA (1164bp) protein (388aa)
mdh; malate dehydrogenase (EC:1.1.1.38)
Malic enzyme, NAD binding domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C775_9FIRM
Malic enzyme, NAD binding domain protein {ECO:0000313|EMBL:EEC91360.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_524_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(28587..29783)
DNA (1197bp) protein (399aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
peptidase T (EC:3.4.11.4)
Peptidase T (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C774_9FIRM
Displaying items 1-30 of 50 in total

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