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L3_072_000M1_scaffold_603

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_603_1
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..108)
DNA (108bp) protein (36aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z258_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR71248.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_072_000M1_scaffold_603_2
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(105..461)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IM10_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOS22955.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
L3_072_000M1_scaffold_603_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(525..848)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JPX9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95148.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_072_000M1_scaffold_603_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1159..1851)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89591.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
metallophosphoesterase
L3_072_000M1_scaffold_603_5
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2074..3393)
DNA (1320bp) protein (440aa)
Transposase, IS605 OrfB family n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UI56_RUMA7
transposase, IS605 OrfB family
Transposase, IS605 OrfB family {ECO:0000313|EMBL:ADU21309.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_072_000M1_scaffold_603_6
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3730..4089)
DNA (360bp) protein (120aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A8S3P4_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGN30197.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
L3_072_000M1_scaffold_603_7
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4530..4799)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) RepID=E0S4F3_BUTPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL36285.1}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L3_072_000M1_scaffold_603_8
unknown

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comp(4889..5026)
DNA (138bp) protein (46aa)

This feature has no annotations

L3_072_000M1_scaffold_603_9
unknown

Not on your lists

comp(4992..5336)
DNA (345bp) protein (115aa)

This feature has no annotations

L3_072_000M1_scaffold_603_10
Mangrovibacter sp. MFB070, Mangrovibacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5410..5634)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Listeria ivanovii FSL F6-596 RepID=E3ZHN8_LISIV
Uncharacterized protein {ECO:0000313|EMBL:KEA50739.1}; TaxID=1224318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Mangrovibacter.;" source="Mangrovibacter sp. MFB070.;"
hypothetical protein
L3_072_000M1_scaffold_603_11
Catenibacterium sp. CAG:290, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5615..6781)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Catenibacterium sp. CAG:290 RepID=R7GJ51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE27394.1}; TaxID=1262767 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium; environmental samples.;" source="Catenibacterium sp. CAG:290.;"
hypothetical protein
L3_072_000M1_scaffold_603_12
unknown

Not on your lists

comp(6772..7113)
DNA (342bp) protein (114aa)

This feature has no annotations

L3_072_000M1_scaffold_603_13
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

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comp(7456..8577)
DNA (1122bp) protein (374aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZD0_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN26274.1}; TaxID=1295009 species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" source="Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1.;"
L3_072_000M1_scaffold_603_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8559..9125)
DNA (567bp) protein (189aa)
Cna B-type domain protein n=1 Tax=Clostridium difficile P28 RepID=T4N4S4_CLODI
Cna B-type domain protein {ECO:0000313|EMBL:EQJ52403.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_072_000M1_scaffold_603_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9122..9454)
DNA (333bp) protein (111aa)
Sortase family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TRX0_9FIRM
Sortase family protein {ECO:0000313|EMBL:CCZ68480.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
LPXTG-site transpeptidase (sortase) family protein
L3_072_000M1_scaffold_603_16
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9432..9977)
DNA (546bp) protein (182aa)
Sortase family protein n=2 Tax=Lachnospiraceae RepID=C9L6H6_BLAHA
Sortase family protein {ECO:0000313|EMBL:EEX22020.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
LPXTG-site transpeptidase (sortase) family protein
L3_072_000M1_scaffold_603_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10043..11875)
DNA (1833bp) protein (611aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FR77_9CLOT
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EEA81456.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Cna protein B-type domain.
L3_072_000M1_scaffold_603_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11897..15484)
DNA (3588bp) protein (1196aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV52_9CLOT
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EEA80070.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Cna protein B-type domain.
L3_072_000M1_scaffold_603_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16200..17282)
DNA (1083bp) protein (361aa)
Putative phage head-tail adaptor n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCC3_9FIRM
Putative phage head-tail adaptor {ECO:0000313|EMBL:EEC89600.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_603_20
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17720..17905)
DNA (186bp) protein (62aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHM55799.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
L3_072_000M1_scaffold_603_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18095..19444)
DNA (1350bp) protein (450aa)
pyruvate formate-lyase (EC:2.3.1.54)
Pyruvate formate lyase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCC4_9FIRM
Pyruvate formate lyase {ECO:0000313|EMBL:EEC89601.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_603_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

19626..20540
DNA (915bp) protein (305aa)
Glycyl-radical enzyme activating protein family protein {ECO:0000313|EMBL:EEC89602.1}; EC=1.97.1.- {ECO:0000313|EMBL:EEC89602.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Pyruvate-formate lyase-activating enzyme (EC:1.97.1.4)
Glycyl-radical enzyme activating protein family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCC5_9FIRM
L3_072_000M1_scaffold_603_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20605..21351
DNA (747bp) protein (249aa)
Transcriptional regulator, DeoR family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCC6_9FIRM
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EEC89603.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
transcriptional regulator, DeoR family
L3_072_000M1_scaffold_603_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21877..23559)
DNA (1683bp) protein (561aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCC7_9FIRM
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EEC89604.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
family 5 extracellular solute-binding protein
L3_072_000M1_scaffold_603_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23676..24521)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase I (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCC8_9FIRM
S-adenosylmethionine-dependent methyltransferase, YraL family {ECO:0000313|EMBL:EEC89553.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
tetrapyrrole methylase family protein
L3_072_000M1_scaffold_603_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24514..25347)
DNA (834bp) protein (278aa)
PSP1 C-terminal domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCC9_9FIRM
PSP1 C-terminal domain protein {ECO:0000313|EMBL:EEC89554.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
stage 0 sporulation protein
L3_072_000M1_scaffold_603_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(25347..26261)
DNA (915bp) protein (305aa)
DNA polymerase III, delta' subunit {ECO:0000313|EMBL:EEC89555.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEC89555.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
holB; DNA-directed DNA polymerase III delta' subunit (EC:2.7.7.7)
DNA polymerase III, delta' subunit n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCD0_9FIRM
L3_072_000M1_scaffold_603_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26254..26886)
DNA (633bp) protein (211aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCD1_9FIRM
L3_072_000M1_scaffold_603_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(27076..27945)
DNA (870bp) protein (290aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCD3_9FIRM
L3_072_000M1_scaffold_603_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(28033..29901)
DNA (1869bp) protein (623aa)
Cadmium-exporting ATPase {ECO:0000313|EMBL:EEC89559.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EEC89559.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase (EC:3.6.3.5)
Cadmium-exporting ATPase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCD4_9FIRM
Displaying items 1-30 of 52 in total

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