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L3_072_000M1_scaffold_706

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Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_706_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

146..508
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8T7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90835.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_706_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

614..1924
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8T8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90836.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_706_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1936..2727)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8T9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90837.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_706_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

2870..3739
DNA (870bp) protein (290aa)
LysR substrate binding domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8U0_9FIRM
LysR substrate binding domain protein {ECO:0000313|EMBL:EEC90838.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LysR family transcriptional regulator, transcription activator of glutamate synthase operon
L3_072_000M1_scaffold_706_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3748..4773)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8U1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90839.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted membrane protein
L3_072_000M1_scaffold_706_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4877..5752
DNA (876bp) protein (292aa)
LysR substrate binding domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8U2_9FIRM
LysR substrate binding domain protein {ECO:0000313|EMBL:EEC90840.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Putative transcriptional regulator (LysR family)
L3_072_000M1_scaffold_706_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5745..6095)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8V2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90806.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_706_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6170..6628)
DNA (459bp) protein (153aa)
Acetyltransferase, GNAT family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8U5_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EEC90843.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
GNAT family acetyltransferase
L3_072_000M1_scaffold_706_9
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6670..7464)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EQU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE04648.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L3_072_000M1_scaffold_706_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(7510..8136)
DNA (627bp) protein (209aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8V3_9FIRM
L3_072_000M1_scaffold_706_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8133..8672)
DNA (540bp) protein (180aa)
DnaD domain protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8V4_9FIRM
DnaD domain protein {ECO:0000313|EMBL:EEC90808.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DnaD and phage-associated domain
L3_072_000M1_scaffold_706_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8672..9139)
DNA (468bp) protein (156aa)
Uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8V5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90788.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_706_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9159..9839)
DNA (681bp) protein (227aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
MTA/SAH nucleosidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8V6_9FIRM
L3_072_000M1_scaffold_706_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9836..10546)
DNA (711bp) protein (237aa)
Methyltransferase domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8V7_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:EEC90790.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
methyltransferase
L3_072_000M1_scaffold_706_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10536..10874)
DNA (339bp) protein (113aa)
Ribosomal silencing factor RsfS n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8V8_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Uncharacterized homolog of plant Iojap protein
L3_072_000M1_scaffold_706_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10877..11893)
DNA (1017bp) protein (339aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Nicotinate-nucleotide adenylyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8V9_9FIRM
nadD; nicotinic acid mononucleotide adenylyltransferase
L3_072_000M1_scaffold_706_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11890..12180)
DNA (291bp) protein (97aa)
Putative RNA-binding protein, YhbY family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W0_9FIRM
Putative RNA-binding protein, YhbY family {ECO:0000313|EMBL:EEC90793.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
RNA-binding protein
L3_072_000M1_scaffold_706_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12180..13259)
DNA (1080bp) protein (360aa)
Putative ribosome biogenesis GTPase YqeH n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W1_9FIRM
Putative ribosome biogenesis GTPase YqeH {ECO:0000313|EMBL:EEC90794.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
yqeH; ribosome biogenesis GTPase YqeH
L3_072_000M1_scaffold_706_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13252..13776)
DNA (525bp) protein (175aa)
HAD phosphatase, family IIIA {ECO:0000313|EMBL:EEC90795.1}; EC=3.1.3.- {ECO:0000313|EMBL:EEC90795.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
HAD phosphatase, family IIIA n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W2_9FIRM
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
L3_072_000M1_scaffold_706_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13776..15347)
DNA (1572bp) protein (524aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90796.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_706_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15352..16317)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90797.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_706_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16262..17473)
DNA (1212bp) protein (404aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Alanine racemase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W5_9FIRM
amino acid racemase
L3_072_000M1_scaffold_706_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17467..18522)
DNA (1056bp) protein (352aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W6_9FIRM
L3_072_000M1_scaffold_706_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18519..19874)
DNA (1356bp) protein (452aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W7_9FIRM
L3_072_000M1_scaffold_706_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20259..20651
DNA (393bp) protein (131aa)
Histidine triad domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W8_9FIRM
Histidine triad domain protein {ECO:0000313|EMBL:EEC90801.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Hit-like protein
L3_072_000M1_scaffold_706_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20669..21445)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90802.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_706_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21456..23429)
DNA (1974bp) protein (658aa)
RecG-like helicase (EC:3.6.1.-)
Putative ATP-dependent DNA helicase RecG (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8X0_9FIRM
Putative ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EEC90803.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_706_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23419..24204)
DNA (786bp) protein (262aa)
Uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8X1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90770.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_706_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24311..25369
DNA (1059bp) protein (353aa)
M42 glutamyl aminopeptidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8X2_9FIRM
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:EEC90771.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Peptidase, M42 family
L3_072_000M1_scaffold_706_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

25370..26224
DNA (855bp) protein (285aa)
EDD domain protein, DegV family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8X3_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EEC90772.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
degV.1; DegV family protein
Displaying items 1-30 of 55 in total

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