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L3_072_000M1_scaffold_870

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_870_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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121..2037
DNA (1917bp) protein (639aa)
Putative aconitate hydratase {ECO:0000313|EMBL:EEC91340.1}; EC=4.2.1.3 {ECO:0000313|EMBL:EEC91340.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
aconitase (EC:4.2.1.3)
Putative aconitate hydratase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A3_9FIRM
L3_072_000M1_scaffold_870_2
Firmicutes bacterium M10-2, Firmicutes, Bacteria

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2372..3667
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium M10-2 RepID=R9LRV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61061.1}; TaxID=1235796 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium M10-2.;"
HNH endonuclease
L3_072_000M1_scaffold_870_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3672..4568
DNA (897bp) protein (299aa)
Cation diffusion facilitator family transporter n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A4_9FIRM
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EEC91341.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
cation diffusion facilitator family transporter
L3_072_000M1_scaffold_870_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4577..5188
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91342.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_870_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5197..5928
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91343.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_870_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6216..7322
DNA (1107bp) protein (369aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A7_9FIRM
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hisZ; ATP phosphoribosyltransferase regulatory subunit
L3_072_000M1_scaffold_870_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

7319..7969
DNA (651bp) protein (217aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A8_9FIRM
L3_072_000M1_scaffold_870_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

7944..9230
DNA (1287bp) protein (429aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hisD; histidinol dehydrogenase HisD (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7A9_9FIRM
L3_072_000M1_scaffold_870_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9230..10240
DNA (1011bp) protein (337aa)
hisC; histidinol-phosphate transaminase (EC:2.6.1.9)
Putative histidinol-phosphate transaminase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B0_9FIRM
Putative histidinol-phosphate transaminase {ECO:0000313|EMBL:EEC91347.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_870_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10227..10808
DNA (582bp) protein (194aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|SAAS:SAAS00218099}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|SAAS:SAAS00263879};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hisB; imidazoleglycerol-phosphate dehydratase HisB (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B1_9FIRM
L3_072_000M1_scaffold_870_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10805..11404
DNA (600bp) protein (200aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hisH; imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B2_9FIRM
L3_072_000M1_scaffold_870_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11405..12115
DNA (711bp) protein (237aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B3_9FIRM
L3_072_000M1_scaffold_870_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12109..12864
DNA (756bp) protein (252aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B4_9FIRM
imidazole glycerol phosphate synthase subunit HisF
L3_072_000M1_scaffold_870_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12861..13193
DNA (333bp) protein (111aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B5_9FIRM
hisI; phosphoribosyl-AMP cyclohydrolase
L3_072_000M1_scaffold_870_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13186..13692
DNA (507bp) protein (169aa)
Hydrolase, NUDIX family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B6_9FIRM
Hydrolase, NUDIX family {ECO:0000313|EMBL:EEC91353.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ADP-ribose pyrophosphatase
L3_072_000M1_scaffold_870_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14055..14435
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91354.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_870_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14515..15291
DNA (777bp) protein (259aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B8_9FIRM
L3_072_000M1_scaffold_870_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15288..16667
DNA (1380bp) protein (460aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
M18 family aminopeptidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7B9_9FIRM
putative M18 family aminopeptidase 1
L3_072_000M1_scaffold_870_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16671..17504
DNA (834bp) protein (278aa)
Cof-like hydrolase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C0_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EEC91357.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
HAD-superfamily hydrolase, subfamily IIB
L3_072_000M1_scaffold_870_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17491..18354
DNA (864bp) protein (288aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C1_9FIRM
L3_072_000M1_scaffold_870_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18362..18841
DNA (480bp) protein (160aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
folA; dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C2_9FIRM
L3_072_000M1_scaffold_870_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18948..20141
DNA (1194bp) protein (398aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C3_9FIRM
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EEC91319.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SARP family transcriptional regulator
L3_072_000M1_scaffold_870_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20162..22327
DNA (2166bp) protein (722aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C4_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEC91320.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
diguanylate cyclase (GGDEF) domain
L3_072_000M1_scaffold_870_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22346..23251
DNA (906bp) protein (302aa)
Transglutaminase-like protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C5_9FIRM
Transglutaminase-like protein {ECO:0000313|EMBL:EEC91321.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Transglutaminase-like enzymes, putative cysteine proteases
L3_072_000M1_scaffold_870_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23263..24261
DNA (999bp) protein (333aa)
Bacterial type II secretion system domain protein F n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C6_9FIRM
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:EEC91322.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
gspF; type II secretion system protein F GspF
L3_072_000M1_scaffold_870_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24266..24556
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91323.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_870_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24553..24996
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91324.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_870_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24993..25316
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7C9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91325.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_870_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

25313..25606
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7D0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91326.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_870_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

25608..26663
DNA (1056bp) protein (352aa)
Twitching motility protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7D1_9FIRM
Twitching motility protein {ECO:0000313|EMBL:EEC91327.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
pilus retraction protein PilT
Displaying items 1-30 of 38 in total

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