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L3_072_000M1_scaffold_1192

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1192_1
Dictyostelium fasciculatum, Dictyostelium, Dictyosteliida, Eukaryota

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2..805
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Dictyostelium fasciculatum (strain SH3) RepID=F4PVK7_DICFS
Putative uncharacterized protein {ECO:0000313|EMBL:EGG20021.1}; TaxID=1054147 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium.;" source="Dictyostelium fasciculatum (strain SH3) (Slime mold).;"
hypothetical protein
L3_072_000M1_scaffold_1192_2
Clostridium sp. CAG:768, Melainabacteria, Bacteria

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945..2237
DNA (1293bp) protein (431aa)
Galactokinase (EC:2.7.1.6)
GHMP kinase N-terminal domain protein n=1 Tax=Clostridium sp. CAG:768 RepID=R7I1R7_9CLOT
GHMP kinase N-terminal domain protein {ECO:0000313|EMBL:CDE45590.1}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
L3_072_000M1_scaffold_1192_3
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2254..3267
DNA (1014bp) protein (338aa)
UDP-glucose 4-epimerase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CM29_9FIRM
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDA72586.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
UDP-glucose 4-epimerase
L3_072_000M1_scaffold_1192_4
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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3417..3620
DNA (204bp) protein (68aa)
Copper-exporting ATPase {ECO:0000313|EMBL:EDR97872.1}; EC=3.6.3.4 {ECO:0000313|EMBL:EDR97872.1};; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
Heavy-metal-associated domain-containing protein n=1 Tax=Anaerostipes sp. 3_2_56FAA RepID=E5VTF2_9FIRM
Heavy-metal binding protein
L3_072_000M1_scaffold_1192_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3671..4279
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MK45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01924.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L3_072_000M1_scaffold_1192_6
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4276..4746)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LXY9_CLOCD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV69921.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_072_000M1_scaffold_1192_7
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4822..6216)
DNA (1395bp) protein (465aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LFJ3_RUMC1
ABC-type sugar transport system, periplasmic component
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:CBL18388.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_072_000M1_scaffold_1192_8
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6240..7199)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002E4F727
Uncharacterized protein {ECO:0000313|EMBL:EWM54686.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
NAD dependent epimerase/dehydratase family.
L3_072_000M1_scaffold_1192_9
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7676..9271
DNA (1596bp) protein (532aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Ribonuclease Y n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MRM9_9FIRM
conserved hypothetical protein
L3_072_000M1_scaffold_1192_10
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9358..10779
DNA (1422bp) protein (474aa)
O-Antigen ligase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LFH5_RUMC1
O-Antigen ligase.
O-Antigen ligase {ECO:0000313|EMBL:CBL18370.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_072_000M1_scaffold_1192_11
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10807..12126
DNA (1320bp) protein (440aa)
uncharacterized domain HDIG (EC:2.7.7.72 3.1.3.- 3.1.4.-)
Uncharacterized domain HDIG n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLI7_9FIRM
Uncharacterized domain HDIG {ECO:0000313|EMBL:CDF00808.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L3_072_000M1_scaffold_1192_12
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12143..13000)
DNA (858bp) protein (286aa)
stage 0 sporulation protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0003071782
Stage 0 sporulation protein {ECO:0000313|EMBL:EWM54671.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
yaaT; Stage 0 sporulation protein YaaT
L3_072_000M1_scaffold_1192_13
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13035..13997)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MIZ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF00595.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L3_072_000M1_scaffold_1192_14
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14011..14322)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBC6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31202.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_072_000M1_scaffold_1192_15
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14366..15667)
DNA (1302bp) protein (434aa)
Arginine/lysine/ornithine decarboxylases (EC:4.1.1.19 4.1.1.18)
Orn/Lys/Arg decarboxylase, major region n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37C01
Uncharacterized protein {ECO:0000313|EMBL:EWM54745.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
L3_072_000M1_scaffold_1192_16
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15732..16034)
DNA (303bp) protein (101aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LF85_RUMC1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog {ECO:0000313|EMBL:CBL18280.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_072_000M1_scaffold_1192_17
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16474..17073
DNA (600bp) protein (200aa)
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein {ECO:0000313|EMBL:EDO58200.1}; EC=3.1.3.3 {ECO:0000313|EMBL:EDO58200.1};; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VEJ7_9CLOT
thrH; phosphoserine phosphatase
L3_072_000M1_scaffold_1192_18
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17196..18842
DNA (1647bp) protein (549aa)
glutamyl-tRNA synthetase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002E07A77
Glutamyl-tRNA synthetase {ECO:0000313|EMBL:EWM54316.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain
L3_072_000M1_scaffold_1192_19
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18901..19533)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:303 RepID=R7IM31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE52650.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
L3_072_000M1_scaffold_1192_20
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19702..20922)
DNA (1221bp) protein (407aa)
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR03887.1}; EC=2.4.2.30 {ECO:0000313|EMBL:KIR03887.1};; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HE64_9CLOT
PARP catalytic domain-containing protein
L3_072_000M1_scaffold_1192_21
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(20941..21375)
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=N1ZQV1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ14295.1}; TaxID=44251 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus (Paenibacillus azotofixans).;"
L3_072_000M1_scaffold_1192_22
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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21585..22457
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AD83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX39839.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
outer membrane protein
L3_072_000M1_scaffold_1192_23
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22497..23120)
DNA (624bp) protein (208aa)
CotJC protein n=1 Tax=Ruminococcus albus 8 RepID=E9SGX0_RUMAL
CotJC protein {ECO:0000313|EMBL:EGC01366.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
manganese containing catalase
L3_072_000M1_scaffold_1192_24
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23123..23395)
DNA (273bp) protein (91aa)
spore-coat protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C377BA
Uncharacterized protein {ECO:0000313|EMBL:CDE34192.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
cotJB; Spore coat protein JB
L3_072_000M1_scaffold_1192_25
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23370..23579)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KZP6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE80432.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein predicted by Glimmer/Critica
L3_072_000M1_scaffold_1192_26
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23759..25378
DNA (1620bp) protein (540aa)
Sodium/hydrogen exchanger n=1 Tax=Clostridium sp. CAG:964 RepID=R6U8K3_9CLOT
Sodium/hydrogen exchanger {ECO:0000313|EMBL:CDC78404.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
sodium/hydrogen exchanger
L3_072_000M1_scaffold_1192_27
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25427..26938)
DNA (1512bp) protein (504aa)
Iron only hydrogenase large subunit, C-terminal domain (EC:1.12.7.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9S2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74078.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Displaying 27 items

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