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L3_072_000M1_scaffold_35

Search features with annotation key words

Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_35_1
unknown

Not on your lists

3..278
DNA (276bp) protein (92aa)

This feature has no annotations

L3_072_000M1_scaffold_35_2
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

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396..1853
DNA (1458bp) protein (486aa)
Thiazole biosynthesis protein ThiH n=1 Tax=Caloramator australicus RC3 RepID=I7J5X6_9CLOT
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:CCJ34102.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
biotin and thiamin synthesis associated protein
L3_072_000M1_scaffold_35_3
unknown

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2006..2266
DNA (261bp) protein (87aa)

This feature has no annotations

L3_072_000M1_scaffold_35_4
unknown

Not on your lists

2248..2397
DNA (150bp) protein (50aa)

This feature has no annotations

L3_072_000M1_scaffold_35_5
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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2547..3929
DNA (1383bp) protein (461aa)
MATE efflux family protein n=3 Tax=Anaerostipes RepID=B0MEM5_9FIRM
MatE protein {ECO:0000313|EMBL:CDC33946.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
norM; NorM, Na+-driven multidrug efflux pump
L3_072_000M1_scaffold_35_6
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4096..6555
DNA (2460bp) protein (820aa)
Glycoside hydrolase family 9 n=7 Tax=Clostridium thermocellum RepID=A3DCJ2_CLOTH
glycoside hydrolase
Glycoside hydrolase family 9 {ECO:0000313|EMBL:ABN51671.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_072_000M1_scaffold_35_7
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6648..9224
DNA (2577bp) protein (859aa)
mannan endo-1,4-beta-mannosidase (EC:3.2.1.78 3.2.1.91)
Mannan endo-1 4-beta-mannosidase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H1X3_9FIRM
Mannan endo-1 4-beta-mannosidase {ECO:0000313|EMBL:CDE33340.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
L3_072_000M1_scaffold_35_8
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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9309..10232
DNA (924bp) protein (308aa)
LysR-type transcriptional regulator n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AYF4_SYNWW
LysR-type transcriptional regulator
LysR-type transcriptional regulator {ECO:0000313|EMBL:ABI68250.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
L3_072_000M1_scaffold_35_9
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10225..11049)
DNA (825bp) protein (275aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Germination protease. (EC:3.4.24.78)
Germination protease n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MPL7_9FIRM
L3_072_000M1_scaffold_35_10
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11329..11583
DNA (255bp) protein (85aa)
30S ribosomal protein S20 n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MQ52_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
SSU ribosomal protein S20P
L3_072_000M1_scaffold_35_11
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11651..12412
DNA (762bp) protein (254aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MTW8_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:CDF03233.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L3_072_000M1_scaffold_35_12
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12452..13813)
DNA (1362bp) protein (454aa)
Transporter n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B8P7_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Na+-dependent transporters of the SNF family
L3_072_000M1_scaffold_35_13
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14173..15489
DNA (1317bp) protein (439aa)
Extracellular solute-binding protein family 1 n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JGJ5_CELLD
ABC transporter substrate-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ADZ82950.1}; Flags: Precursor;; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_072_000M1_scaffold_35_14
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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15495..16862
DNA (1368bp) protein (456aa)
AdrA protein n=1 Tax=Butyrivibrio crossotus CAG:259 RepID=R5LC59_9FIRM
AdrA protein {ECO:0000313|EMBL:CCY76775.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
PAS/PAC sensor-containing diguanylate cyclase
L3_072_000M1_scaffold_35_15
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16925..17353)
DNA (429bp) protein (143aa)
Flavodoxin short chain n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NGH3_9FIRM
Flavodoxin short chain {ECO:0000313|EMBL:CDF12564.1}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
flavodoxin, short chain
L3_072_000M1_scaffold_35_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17376..17924)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J7Z2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78444.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_000M1_scaffold_35_17
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18249..19829)
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7AZU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD54252.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
hypothetical protein
L3_072_000M1_scaffold_35_18
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20104..20505
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLP5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF02004.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Iron dependent repressor, N-terminal protein
L3_072_000M1_scaffold_35_19
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20518..20817)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JT94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE66851.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
Uncharacterized protein conserved in bacteria (DUF2325).
L3_072_000M1_scaffold_35_20
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21011..24847)
DNA (3837bp) protein (1279aa)
Pectate lyase/Amb allergen n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KQS3_CLOPH
Pectate lyase/Amb allergen
Pectate lyase/Amb allergen {ECO:0000313|EMBL:ABX41986.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_072_000M1_scaffold_35_21
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25087..25608
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CU60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA76374.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
L3_072_000M1_scaffold_35_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25610..25996
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD160 RepID=T3DBG4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQF23905.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
lipoprotein
L3_072_000M1_scaffold_35_23
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25965..26483
DNA (519bp) protein (173aa)
Putative membrane protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H3C7_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDE33503.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
hypothetical protein
L3_072_000M1_scaffold_35_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26800..29883
DNA (3084bp) protein (1028aa)
Ricin-type beta-trefoil lectin domain protein (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4T5_9FIRM
Ricin-type beta-trefoil lectin domain protein {ECO:0000313|EMBL:ERJ96754.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Dockerin type I repeat./Ricin-type beta-trefoil lectin domain.
L3_072_000M1_scaffold_35_25
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29956..32013)
DNA (2058bp) protein (686aa)
primase n=1 Tax=[Clostridium] glycolicum RepID=UPI00036E6FB2
Surface/cell-adhesion protein {ECO:0000313|EMBL:CEQ03273.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L3_072_000M1_scaffold_35_26
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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comp(32117..32800)
DNA (684bp) protein (228aa)
ATPase components of various ABC-type transport systems contain duplicated ATPase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MP28_9FIRM
ATPase components of various ABC-type transport systems contain duplicated ATPase {ECO:0000313|EMBL:CDC00515.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
membrane protein
L3_072_000M1_scaffold_35_27
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32784..34337)
DNA (1554bp) protein (518aa)
Cobalt ABC transport system ATP-binding protein CbiO5 n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DTT8_9FIRM
Cobalt ABC transport system ATP-binding protein CbiO5 {ECO:0000313|EMBL:CDA91000.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L3_072_000M1_scaffold_35_28
Paenibacillus pini, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(34331..35194)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00037A63E9
Transmembrane component CbrV {ECO:0000313|EMBL:GAF08831.1}; TaxID=1236976 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus pini JCM 16418.;"
cobalt transporter
L3_072_000M1_scaffold_35_29
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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comp(35194..36522)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RJS2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33197.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
hypothetical protein
L3_072_000M1_scaffold_35_30
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(36537..36797)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NKA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF12527.1}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
Displaying items 1-30 of 140 in total

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